Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05976 ATGGAAATGATGTCTCAAAAATTTTACATCCTTCATATAAATCAATCCTCTCAAGTTTTGAGGATTGCTAGAGACGATTTATGGGGTTTTCTTCCTGGAAATGCGTTTTCTTGTCCCAAACATTATACTAATGTGGAAATAGATTCCCATTTCTTCCATTACACATCCAACAATGAGATGTATACGATATTGTATAAGTGTGGTCCTCTTCCAAATTCATTCTTTACTCCCTCATTTCAAATTTCTTTTGAAGTAATCGGTTGTTATATGGAGGGAAAATTTCATAGTACATACGTAGTATCAAGTTCTAAATTGACTGATTTCAATGCGGTGAACTGCAAGAATAGTATCACAGTTCCTGGAAAAAAGAATTCTTTGCCAAACAAATCATGTGTTATGGAGGGTATTTTAGTCCAAGGATTTGAGGTGAGATGGAATGGTGTTGGGGAAGACAAGTGCCATGCTTGTACAAAATATGGAGGGAGATGTGGATACAAAAAAGTAGAAAATGCATTTATTTGTCTCTCGAAGAGATCTGCCACATCAAAAGGAAAACTTCCAGATGGGCGTGAAGTGGCAGTGAAAAGGCTTTTTGAATACGGCGTCAATAAAGAACGACAATTTCTTAACGAAATAAATATACTAGCAAGAACTGATCATCCCAATCTCATCTTGGTATATGGTTGCACATCACTCAAAAGTCGTCGAGCTTTGGTTGTCTACGAGTATGTTCCTAATGGATTTTTGAGTGATCATCTTCAAGGTGACAAAGCAACACCTAATAAACTTCCTTGGAACATTAGAATGAGGACTACCGTGGAGACAGCAGGTGCATTGAACCATCTTCATGCTTCTGATATCATTCATAGGGATATTAAAACGAGTAATATTCTCTTAGATGCCGAATACCATGTTAAAGCAGCTGATTTTGGACTTTCGCGCCATATGTAG 951 0.3712 MEMMSQKFYILHINQSSQVLRIARDDLWGFLPGNAFSCPKHYTNVEIDSHFFHYTSNNEMYTILYKCGPLPNSFFTPSFQISFEVIGCYMEGKFHSTYVVSSSKLTDFNAVNCKNSITVPGKKNSLPNKSCVMEGILVQGFEVRWNGVGEDKCHACTKYGGRCGYKKVENAFICLSKRSATSKGKLPDGREVAVKRLFEYGVNKERQFLNEINILARTDHPNLILVYGCTSLKSRRALVVYEYVPNGFLSDHLQGDKATPNKLPWNIRMRTTVETAGALNHLHASDIIHRDIKTSNILLDAEYHVKAADFGLSRHM 316
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05976 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Vivi3g05976 316 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 3 179 IPR044652 GO:0004672
Vivi3g05976 316 SMART serkin_6 165 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05976 316 ProSiteProfiles Protein kinase domain profile. 154 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05976 316 SUPERFAMILY Protein kinase-like (PK-like) 183 315 IPR011009 -
Vivi3g05976 316 Gene3D Transferase(Phosphotransferase) domain 1 166 316 - -
Vivi3g05976 316 Pfam Protein tyrosine and serine/threonine kinase 188 316 IPR001245 GO:0004672|GO:0006468
Vivi3g05976 316 Pfam Wall-associated receptor kinase C-terminal 97 176 IPR032872 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi3g05976 Vivi-Chr3 144827008 144828697 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05976 184 314 Receptor kinase-like Gene Family AT1G25390 58.647 1.46e-45 161
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi3g05976 PK_Tyr_Ser-Thr 4.2e-26 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05976 - - vvo:131639043 635.95