Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05975 ATGTATACTATATTGTATGAGTATGGTGATCTTCCAAATTCATACTTTACTCCCTCGTTTCAAATTCCTTTTGAAGTAATTGGTTGTTATATCGACGGAAAATTTCATAGTAGATACGTAGTTTCAAGTTCTAAATTGACTGATTTTAATGCGGTGAACTGCAAGCATAGTATCACAGTACCTAGAAAAAAGAAATCTTTGCCAAACAAATCACGCGTTATGGAGGGTATTTTAGTCCAAGGATTTGAGGTGAGATGGAACATTGGAACGGTGTTGGGAAAGACAGGAACATGGAATTTGAAAAAGAAAATCATCATTGGAAAACTACCAGATGGGCGTGAAGTGGCAGTGAAAAGGCTTTTTAAATACGGCGTCAATAATGAACAACAATTTCTTAACGAAATAAATATACTAGCAAGAACTTTTCATCGTAATCTCATCTTATTATATGGTTGCACATCACTCAAAAGTCGTCGTGCTTTGGTTGTCTACGAGTATGTTCCTAATGGACCTTTGAGTGATCATCTTCATGGTGATAAAGCAACACCTAATAAACTTCCTTGGAACATTAGGATGAGGATTGCCGTGGAGACAACAGATGCATTGAACCATCTTCACGCTTCTCATATCATTCATAGGGATATTAAAACGAGTAATATTCTCTTAGATGCCGAATACCATGTTAAAGTAGATGATTTTGGACTTTCGCGCCTCTTTCCTAAAGATCAAAGTCATGGTTTAACAATTCCACAACGGACATCAGGCTATGTAGATCCCGAGGACAATCGAACTAATGCACTTACTTACAAAAGTGATGTGTTCAATTTTGGAGTGGTGTTGATTGAACTCATAACATCTTTGCGTGCTTATGATCGCAACAGAAAGGATGATGGTGTCAATCTTTTTGATACAGATTCCATGGTAAAGCAAATGATTAATGGGGTTGCCGAGTTAGCACTTTCTTGTCTCCAAAGTTCCGGTGATATGAGACCGACAATGGAATCTGTGCTCCAATGTTTACAAAGTTTCAAGGATGTGAAAGAAATCCAACCTCAAGTAGCCGGCAGTTCTAGCCCAAATGATGAAATAGTGTTGCTGAATAATGATCTAGCTTGA 1116 0.3763 MYTILYEYGDLPNSYFTPSFQIPFEVIGCYIDGKFHSRYVVSSSKLTDFNAVNCKHSITVPRKKKSLPNKSRVMEGILVQGFEVRWNIGTVLGKTGTWNLKKKIIIGKLPDGREVAVKRLFKYGVNNEQQFLNEINILARTFHRNLILLYGCTSLKSRRALVVYEYVPNGPLSDHLHGDKATPNKLPWNIRMRIAVETTDALNHLHASHIIHRDIKTSNILLDAEYHVKVDDFGLSRLFPKDQSHGLTIPQRTSGYVDPEDNRTNALTYKSDVFNFGVVLIELITSLRAYDRNRKDDGVNLFDTDSMVKQMINGVAELALSCLQSSGDMRPTMESVLQCLQSFKDVKEIQPQVAGSSSPNDEIVLLNNDLA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05975 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vivi3g05975 371 Gene3D Transferase(Phosphotransferase) domain 1 167 354 - -
Vivi3g05975 371 ProSiteProfiles Protein kinase domain profile. 86 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05975 371 SMART serkin_6 86 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05975 371 SUPERFAMILY Protein kinase-like (PK-like) 105 347 IPR011009 -
Vivi3g05975 371 Pfam Protein tyrosine and serine/threonine kinase 111 340 IPR001245 GO:0004672|GO:0006468
Vivi3g05975 371 Gene3D Phosphorylase Kinase; domain 1 81 166 - -
Vivi3g05975 371 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 104 348 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05975 Vivi-Chr3 144693854 144695850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05975 104 351 Receptor kinase-like Gene Family AT1G25390 48.897 2.03e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi3g05975 PK_Tyr_Ser-Thr 7.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05975 - - vvo:131659113 750.355