Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05972 ATGAGGATTACCATGGAGACAGCAGGTGCATTGAACCATCTTCATGCTTCTGATATCATTCATACGGATATTAAAACGAGTAATATTCTCTTAGATGCCGAATACCATGTTAAAGTAGCTGATTTTGGACTTTCGCGCCATTTTCCTAATGATCAAAGTCGTGTTTTAACAATTCCACAAGGGACATATGTAGATCCTGAGTACAATCGAACTAATGCACTTACTTATGAAAGTGATGTGTTCAGTTTTGGAGTGGTGTTGATTGAGCTTATAACATCTTTGTGTGCTTATGATCACAACAGAAAGGATGATGTGTCAATCTGTATGACATGGCTATTAACAGAACTCAAAATCAAACTTTGCATGATATTGTGGATCATACCCTCGGTTTTGATATAA 399 0.3659 MRITMETAGALNHLHASDIIHTDIKTSNILLDAEYHVKVADFGLSRHFPNDQSRVLTIPQGTYVDPEYNRTNALTYESDVFSFGVVLIELITSLCAYDHNRKDDVSICMTWLLTELKIKLCMILWIIPSVLI 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05972 132 SUPERFAMILY Protein kinase-like (PK-like) 2 114 IPR011009 -
Vivi3g05972 132 Pfam Protein kinase domain 3 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05972 132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 19 31 IPR008271 GO:0004672|GO:0006468
Vivi3g05972 132 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 104 IPR044652 GO:0004672
Vivi3g05972 132 ProSiteProfiles Protein kinase domain profile. 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05972 132 Gene3D Transferase(Phosphotransferase) domain 1 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05972 Vivi-Chr3 144520858 144522230 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05972 1 101 Receptor kinase-like Gene Family AT1G25390 63.107 1.39e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi3g05972 Pkinase 5.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05972 - - vvo:131662482 270.011