Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05969 ATGTACACATTTTGTGCACCTTTTAGCTGCGGTAATTTCATCAATATAACCTATCCTTTCTGGAACCTTAACACACAATCTAGCTACTATGGACGCCCTGAGTTTATGCTTGACTGCCAAAATGGTAGATTGACTATGGAAATGATGTCTAAAAAATTTTACATCCTTCATATAAATCAATCCTCTCAAGTTTTGAGGATTGCAAGAGACGTTTTATGGAGTTTTCTTCCAGGAAATGAGTTTTCTTGTCCCAAACATTATGGTAATGTGGAAATAGATTCCCATTTCTTCCATTACACTTCCAACAATGAAATGTATACTATATTGTATGAGTGTGGTGATCTTCCAAATTCATACTTTACTCCCTCGTTTCAAATTCCTTTTGAAGTAATTGGTTGTTATATCGACGGAAAATTTCATAGTACATACGTAGTTTCAAGTTCTAAATTGACTGATTTTAATGCGGTGAACGGCAAGCATAGTATCACAGTACCTGGAAAAAAGAACACTTTGCCAAACAAATCACGCGTTATGGAGGGAACATGGAATTTGAAAAAGAAAATCATTATTGGAAAACTACCAGATGGGCGTGAAGTGGCAGTGAAAAGGCTTTTTAAATACGGCGTCAATAATGAACAACAATTTCTTAACGAAATAAATATACTAGGAAGAACTTTTCATCGTAATCTCATCTTATTATATGGTTGCACATCACTCAAAAGTCGTCGTGCTTTGGTTGTCTACGAGTATGTTCCTAATGGATCTTTGAGTGATCATCTTCATGGTGACAAAGCAACACCTAATAAACTTCCTTGGAACAATAGGATGAGGATTTCCGTGGAGATAGCAGATGCATTGAACAATCTTCATGCTTCTCATATCATTCATAGGGATATTAAAACGAGTAATATTCTCTTAGATGCCGAATACCATGTTAAAGTAGCTGATTTTGGACTTGCGCGCCTCTTTCCGAAAGATCAAAGTCATGTTTTAACAATTCCACAACGGACATCAGGCTATGTAGATCCCGAGGACAATCAGACTAATGCACTTACTTACAAAAGTGATGTGTTCAGTTTTGGTGTGGTGTTGATTGAACTCATAACATCTTTGCGTGCTTATGATCGCAACAGAAAGGATGATGGTGTCAATCTGTATGACATGGCTATTAAAAAAATTCAAGATCACACTTTGCATGATATTGTGGATCATACCCTCGGTTTTGATACAGATTCCATGGTAAAGCAAATGATTAATGGGGTTGCCGAGTTAGCACTTTCTTGTCTCCAAAGTTCCGGTGATATGAGACCGACAATGGAATCTGTGCTCCAATGTTTACAAAGTCTCAAGGATGTGAAAGAAATCCAACCTCAAGTAGCCGGAAGTTCTAGCCCAAATGATGAAATAGTGTTGCTGAATAATGATCTAGCTTGA 1434 0.371 MYTFCAPFSCGNFINITYPFWNLNTQSSYYGRPEFMLDCQNGRLTMEMMSKKFYILHINQSSQVLRIARDVLWSFLPGNEFSCPKHYGNVEIDSHFFHYTSNNEMYTILYECGDLPNSYFTPSFQIPFEVIGCYIDGKFHSTYVVSSSKLTDFNAVNGKHSITVPGKKNTLPNKSRVMEGTWNLKKKIIIGKLPDGREVAVKRLFKYGVNNEQQFLNEINILGRTFHRNLILLYGCTSLKSRRALVVYEYVPNGSLSDHLHGDKATPNKLPWNNRMRISVEIADALNNLHASHIIHRDIKTSNILLDAEYHVKVADFGLARLFPKDQSHVLTIPQRTSGYVDPEDNQTNALTYKSDVFSFGVVLIELITSLRAYDRNRKDDGVNLYDMAIKKIQDHTLHDIVDHTLGFDTDSMVKQMINGVAELALSCLQSSGDMRPTMESVLQCLQSLKDVKEIQPQVAGSSSPNDEIVLLNNDLA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05969 477 Pfam Protein tyrosine and serine/threonine kinase 176 446 IPR001245 GO:0004672|GO:0006468
Vivi3g05969 477 SUPERFAMILY Protein kinase-like (PK-like) 191 458 IPR011009 -
Vivi3g05969 477 Pfam Wall-associated receptor kinase galacturonan-binding 5 69 IPR025287 GO:0030247
Vivi3g05969 477 SMART serkin_6 184 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05969 477 ProSiteProfiles Protein kinase domain profile. 128 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05969 477 Gene3D Phosphorylase Kinase; domain 1 168 250 - -
Vivi3g05969 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Vivi3g05969 477 Gene3D Transferase(Phosphotransferase) domain 1 251 460 - -
Vivi3g05969 477 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 6 170 IPR044652 GO:0004672
Vivi3g05969 477 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 251 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05969 Vivi-Chr3 144338446 144340855 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05969 188 457 Receptor kinase-like Gene Family AT1G25390 52.574 6.60e-91 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi3g05969 PK_Tyr_Ser-Thr 4.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05969 - - vvo:131659108 977.237