Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05955 ATGTCTTCCAACTTTTCTTTGAATGTCGAATTGTCGAAGAAAACATCGGTTTGGGGTTTAAGGCTATGGGTTTTGATTGGAATATGTGTTGGGGCATTCATAGTTCTAATTCTTTGTATAGTATCTACATGGATACTGTTCCGGAGAAAAACAAGGAGATCGAGATCCGTAGATAAGTACTCGATATCGCAAATACCTCACGATTCGAAGGATATCAAAGTTGACAAGGTTGGAGTGAATCCGTCGTCTCATGATGAACTAGAGAGTGTGTCTATTGACGTTCACGATAATGCGGCAAAGGATAAGAATTTTGATTCAGATAAGTTGTTTGTTCATTTAAGCAAATCAAGTGAACCTGATAATATTAGTAGGTGTAGCTCGGTTTATCATCACGATAGAGGGTTAAGTTTGATGTCGATAGAAGATGGAAATCTTGGGACTGTTAAGAAGCAGTATACGGTAACTGCGTCTCCTCTGGCTGGCTTGCCTGAGGTTTCTCATCTTGGGTGGGGCCATTGGTTCACACTAAGAGATCTCGAACTTTCGACTAACCGTTTTGCCCCGGAGAATGTGATTGGTGAAGGCGGATACGGAGTTGTTTACAAGGGAAGATTGATCAATGGATCTGAGGTGGCAGTGAAGAGACTTTTTAACAACTTGGGACAAGCAGAGAAAGAATTCAGGGTCGAAGTCGATGCTATAGGCCATGTCAGACATAAAAACCTTGTGCGCTTACTTGGATTTTGCATAGAAGGAGTTCACAGGTTGCTTGTGTATGAGTATGTGAACAATGGTAACTTAGAACAATGGTTACACGGGGCAATGAGACAACATGGGGTACTCACATGGGAAGCTCGCATGAAAGTTATTCTCGGCACAGCCAAAGCGCTTGCTTACTTACACGAAGCGATAGAACCAAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATTTTGATCGATAGCAAGTTCAACGGAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACCCGAGTAATGGGAACATTTGGTTACGTTGCACCGGAATATGCTAACTCCGGCTTGTTAAATGAGAAAAGCGACATTTACAGCTTTGGTGTTCTCCTACTCGAAGCAATTACCGGAAGAGACCCTGTAGACTATACACGTCCTACCCACGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCCGAGGAAGTTGTGGACTCAAGCATTGAAGAGAAACCGCCGACACGTGCTTTAAAGCGCGCTCTCCTTGTTGCATTTAGATGTGTCGATCCTGAGGCTGAGAAGAGACCTAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCCGACGAATATCCGTTCAGAGAGGATCGGAGAAATAGAAAAAGCCGCGGCGTCAGCATGGATATTGAATCCATTAAGGATAACTCCGGTCCTTCGTATACCGATAAGATGAAAGGTTCAGAAGAATGCGCGACGGAGACACCTCAAAGGTAG 1527 0.4368 MSSNFSLNVELSKKTSVWGLRLWVLIGICVGAFIVLILCIVSTWILFRRKTRRSRSVDKYSISQIPHDSKDIKVDKVGVNPSSHDELESVSIDVHDNAAKDKNFDSDKLFVHLSKSSEPDNISRCSSVYHHDRGLSLMSIEDGNLGTVKKQYTVTASPLAGLPEVSHLGWGHWFTLRDLELSTNRFAPENVIGEGGYGVVYKGRLINGSEVAVKRLFNNLGQAEKEFRVEVDAIGHVRHKNLVRLLGFCIEGVHRLLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDSKFNGKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAITGRDPVDYTRPTHEVNLVEWLKMMVGTRRAEEVVDSSIEEKPPTRALKRALLVAFRCVDPEAEKRPKMSQVVRMLEADEYPFREDRRNRKSRGVSMDIESIKDNSGPSYTDKMKGSEECATETPQR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05955 508 Gene3D Phosphorylase Kinase; domain 1 165 261 - -
Vivi3g05955 508 MobiDBLite consensus disorder prediction 464 479 - -
Vivi3g05955 508 FunFam Putative receptor-like protein kinase 168 261 - -
Vivi3g05955 508 PANTHER OS01G0323000 PROTEIN 1 477 - -
Vivi3g05955 508 MobiDBLite consensus disorder prediction 464 508 - -
Vivi3g05955 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Vivi3g05955 508 ProSitePatterns Protein kinases ATP-binding region signature. 192 214 IPR017441 GO:0005524
Vivi3g05955 508 Pfam Protein kinase domain 189 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05955 508 SUPERFAMILY Protein kinase-like (PK-like) 170 459 IPR011009 -
Vivi3g05955 508 Gene3D Transferase(Phosphotransferase) domain 1 262 474 - -
Vivi3g05955 508 FunFam Putative receptor-like serine/threonine-protein kinase 262 472 - -
Vivi3g05955 508 ProSiteProfiles Protein kinase domain profile. 186 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05955 508 SMART serkin_6 186 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05955 508 CDD STKc_IRAK 192 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05955 Vivi-Chr3 143827178 143830952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05955 16 460 Trihelix Transcription Factor Family AT1G70460 40.177 7.29e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vivi3g05955 Pkinase 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05955 - - gmx:100813931 799.66