Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05940 ATGGATAAACATTCCGGGGATTCTTTGCCAGCTCGTGGGCTGTCTGGGATTTCCTCGCTTAATATTCCAAATAAAGTGGGAAGCAATGCATGGAGAATACCGAACGCGACTGATGTGTTTCAAGATTCTAATGATGTTAGCTTGTTTTCTACTTCGCTGCCTGTTCTTCCGCATGAAAATTTAAATTTGACTGATTCTGAACAAGATGGTCAACCGGTTGATGATAACTTGCTAACAGTAGACAAAGCTCATAAAGAGGACGAGGGGCGTGATCCTTTTGATAATTTTGAAATTAACGCCATTGGAAACATGCTTCCTGATGACGAAGACGAGCTTTTAGCTGGGATAATGGACGATTTTGACCTTAGTGGGTTACCAAATCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTTAATGGAGGCGGATTTGAAATGGATTTTGAATCCCAAGAGAGTCTTAGTTTCGGTGTTTCAAAGATGAGCATATCAGACGGAATTGCTTCTAATGGCATTGGATCATATGCAATCCCGAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTACGGAGAGCATCCATCGAGGACATTGTTTGTTCGAAACATCAATAGTAACGTTGAGGATTCTGAATTAAGAACACTATTTGAGCAATATGGAGATATCAGAACTTTGTACACCGCATGCAAGCACAGGGGCTTCGTGATGATATCTTACTATGACATACGAGCTGCTCGCACTGCGATGCGTGCTTTACAAAACAAACCCCTGAGACGAAGGAAACTTGATATTCATTTTTCAATTCCTAAGGACAATCCCTCGGAAAAAGATATAAACCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCGGTATCAAATGATGACCTTCGTCTAATATTTGGGGTTTATGGTGAGGTCAAAGAGATCAGGGAAACACCACACAAGAGACACCATAAATTTATCGAGTTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTAAATCGAAGCGACATTGCTGGCAAACGCATAAAACTTGAACCTAGCCGTCCTGGTGGAGCCCGCAGAAACTTGATGCAACAACTGAGCCAAGAACTGGAACAAGATGAAGTTCGAACTTTCAGGACTCAAGTAGGTTCGCCTATAGCCAGTTCTCCTCCCGGTACCTGGGCGCAATTCAGTAGTCCTGTTGAACCTAATCCGTTAGGTTCTTACAGCAAGTCCCCTGGTTTGGGTCATGCTAGCCCTATTAATATCAACCATTTGTCCGGATTGGCTGCAATTCTTTCTCCGCACGCATCAACCTCTCCCAAAATTGCGCCGATCGGCAAGGACCCTGGAAGAGTTTCAAATCAGATGTTTGCCAGCTCTGGTGGATCGACACACGGATTAGCTTTTCAACATTCTATCTCATTTCCTGAAAAAAATGTAAATGCAAGTCCTAGGCCTATATCTGCTTTCGGGGAATCAAATTCAAATTCATCGAGTGTTGGAACACTGTCCGGTCCTCAATTTCTTTGGGGAAGCCCGACTCCTTACTCAGAGAATTCAAACACATCTGCCTGGTCTTCGTCTTCCCTTGGCCATCCATTTACATCTAGTGGCCAAAGGCAGGGCTTCCCGTACGCAGGTCAACGCAATCCTTTTCTTGGCTCTCAGCACCATCATCATGTAGGATCTGCTCCATCCGGCCTTCCTCTTGAACGGAATTTCAGATACTTTCCAGAATCGCCCGATACCTCTCTCATGAGCTCCATTGGATTTGGGAATTTAAATCACGGCGATGGGAATTATATGATGAACATGGGTTCTCGTCCATCTGTCGGGCATGGTATTGGCCATTCAGTAACTTCCGGTGAAATTGGTTCGCCTAATTTTGGTATGATGTCTGTACCTGGTCATGGTTCCTTGTTCATAGGAAATAGTTTGTACGCTGGACCTGGACTATCTAGCATCGAGGGATTTGGTGAACGTGGACGAAATCGGCGACCTGACAATAACGTGAACCAAATTGAAAGTAAGAAGCTGTACCAACTTGATCTTGACAAAATCATCAGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGTTGCTTGCTGCAATTGATGAGAATCACCAGGGGACTTATGACTTCCTCTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTACGCTTTCATCAATATGGTTTCTCCTTCACACATCGTCGCCTTCTATAAGGCTTTTAATGGGAAGAAATGGGAAAAGTTTAATAGCGAAAAAGTTGCTTCACTAGCATATGCACGGATTCAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGATGTCGGCCAATCCTTTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGAACACTTTCTATCGAGCAACTTGAATATATGTATTCGTCAACCAGACGGATCATACTCGGGTGATATGTTGGAGAGCCCGAAGGGCAATTCAGATGAAAATCTGGAAAAAGATTGA 2565 0.4308 MDKHSGDSLPARGLSGISSLNIPNKVGSNAWRIPNATDVFQDSNDVSLFSTSLPVLPHENLNLTDSEQDGQPVDDNLLTVDKAHKEDEGRDPFDNFEINAIGNMLPDDEDELLAGIMDDFDLSGLPNQLEDLDENDLFVNGGGFEMDFESQESLSFGVSKMSISDGIASNGIGSYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGVYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEVRTFRTQVGSPIASSPPGTWAQFSSPVEPNPLGSYSKSPGLGHASPININHLSGLAAILSPHASTSPKIAPIGKDPGRVSNQMFASSGGSTHGLAFQHSISFPEKNVNASPRPISAFGESNSNSSSVGTLSGPQFLWGSPTPYSENSNTSAWSSSSLGHPFTSSGQRQGFPYAGQRNPFLGSQHHHHVGSAPSGLPLERNFRYFPESPDTSLMSSIGFGNLNHGDGNYMMNMGSRPSVGHGIGHSVTSGEIGSPNFGMMSVPGHGSLFIGNSLYAGPGLSSIEGFGERGRNRRPDNNVNQIESKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKGNSDENLEKD 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05940 854 FunFam Protein MEI2-like 1 280 375 - -
Vivi3g05940 854 FunFam MEI2-like protein 5 isoform 2 185 279 - -
Vivi3g05940 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 348 IPR000504 GO:0003723
Vivi3g05940 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Vivi3g05940 854 SUPERFAMILY RNA-binding domain, RBD 696 781 IPR035979 GO:0003676
Vivi3g05940 854 CDD RRM1_MEI2_like 195 271 IPR034453 -
Vivi3g05940 854 Pfam RNA recognition motif 2 694 790 IPR007201 -
Vivi3g05940 854 SMART rrm1_1 282 350 IPR000504 GO:0003723
Vivi3g05940 854 SMART rrm1_1 197 265 IPR000504 GO:0003723
Vivi3g05940 854 SMART rrm1_1 696 772 IPR000504 GO:0003723
Vivi3g05940 854 SUPERFAMILY RNA-binding domain, RBD 193 356 IPR035979 GO:0003676
Vivi3g05940 854 CDD RRM3_MEI2_like 697 782 IPR034454 -
Vivi3g05940 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Vivi3g05940 854 MobiDBLite consensus disorder prediction 520 544 - -
Vivi3g05940 854 MobiDBLite consensus disorder prediction 440 463 - -
Vivi3g05940 854 Gene3D - 281 377 IPR012677 -
Vivi3g05940 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Vivi3g05940 854 PANTHER RNA RECOGNITION MOTIF-CONTAINING 115 825 - -
Vivi3g05940 854 Gene3D - 688 783 IPR012677 -
Vivi3g05940 854 MobiDBLite consensus disorder prediction 834 854 - -
Vivi3g05940 854 Gene3D - 185 280 IPR012677 -
Vivi3g05940 854 CDD RRM2_MEI2_like 280 350 - -
Vivi3g05940 854 MobiDBLite consensus disorder prediction 520 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05940 Vivi-Chr3 142986734 142992709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05940 191 505 Eukaryotic Initiation Factors Gene Family AT3G16380 22.571 2.10e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05940 - - gmx:100812324 1455.27