Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05933 ATGGACAAACATTCTGGGGATTCTTTGCCAGTTCGTGGTACTGCAGGGCTGTCTGGGATTTCCTCGCTTAATATTCCAAATAAAGTGGGAAGCAGTGCATGGAGAATACCGAATGCGACTGATGTATTTCAAGATTCTAATGATGTTAGCTTGTTTTCTACTTCGCTGCCTGTTCTTCCGCATGAAAATTTAAATTTGACTGATTCTGAACAAGATGGTCAACCGGTTGATGATAACTTGCTAACAGTAGACAAAGTTCATAAAGAAGACGAGGGGCGTGATCCTTTTGATAACTTTGAAATTAACGCCATTGGAAACATGCTACCTGATGACGAAGACGAGCTTTTAGCTGGGATAATGGATGATTTTGACCTTAGTGGGTTACCAAATCAACTGGAGGATATGGATGAAAATGATCTGTTTGTTAATGGAGGCGGATTTGAAATGGATTTTGAATCCCAAGAGAGTCTTAGTTTCGGTGTTTCAAAGATGAGCATATCAGATGGAATTGCTTCTAATGGCATTGGATCATATGCAATCCCGAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTACGGAGAGCATCCATCGAGGACATTGTTTGTTCGAAACATCAATAGTAACGTTGAGGATTCTGAATTAAGAACACTATTTGAGCAATATGGAGATATCAGAACTTTGTACACCGCATGCAAGCACAGGGGCTTCGTGATGATATCTTACTATGACATACGAGCTGCTCGCACTGCGATGCGTGCTTTACAAAACAAACCCCTGAGACGAAGGAAACTTGATATTCATTTTTCAATTCCTAAGGATAATCCCTCGGAAAAAGATATAAACCAAGGAACCCTCGTAGTGTTCAACTTAGATCCATCGGTATCAAATGACGACCTTCGTCTAATATTTGGGGTTTATGGTGAGGTCAAAGAGATCAGGGAAACACCGCACAAGAGACACCATAAATTTATCGAGTTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTAAATCGAAGCGACATTGCTGGCAAACGCATAAAACTTGAACCTAGCCGTCCTGGTGGAGCCCGCAGAAACTTGATGCAACAACTGAGCCAAGAACTAGAACAAGATGAAGTTCGAACTTTCAGGACTCAAGTAGGTTCGCCTATAGCTAGTTCTCCTCCCGGTAGCTGGGCACAGTTCAGTAGTCCGGTTGAACCTAATCCGTTAGGTTCTTACAGCAAGTCCCCTGGTTTGGGTCATGCTAGCCCTATTAATATCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCGCACGCATCAACCTCTCCCAAAATTGCGCCGATCGGCAAGGACCCTGGAAGAGTTTCAAATCAGATGTTTGCCAGCTCTGGTGGATCGACACACGGATTAGCTTTTCAACATTCTATCTCATTTCCTGAAAAAAATGTAAATGCAAGTCCTAGGCCTATATCTGCTTTCGGGGAATCAAATTCAAATTCATCGAGTGTTGGAACACTGTCCGGTCCTCAATTTCTTTGGGGGAGCCCGACTCCTTACTCAGAGAATTCAAACACATCTGCCTGGTCTTCGTCTTCCCTTGGCCATCCATTTACATCTAGTGGCCAAAGGCAGGGTTTCCCGTACGCAGGTCAACGCAATCCTTTTCTTGGCTCTCAGCACCATCATCATGTAGGATCTGCTCCATCCGGCCTTCCTCTTGAACGAAATTTTAGATACTTTCCAGAATCACCCGATACCTCTCTCATGAGCTCCATTGGATTTGGGAATTTAAATCACGGCGATGGGAATTATATGATGAACATGGGTTCTCGTCCATCTGTCGGGCATGGTATTGGCCATTCAGTAACTTCCAGTGAAATTGGTTCACCTAATTTCGGAATGATGTCCGTACCTGGTCATGGTTCCCTGTTCATTGGAAATAGTTTGTACGCTGGACCTGGACTATCTAGCATCGAGGGATTTGGTGAACGTGGACGAAATCGGCGACCTGACAATAACGTGAACCAAATTGAAAGTAAGAAGCTGTACCAACTTGATCTTGACAAAATCATCAGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGTTGCTTGCTGCAATTGATGAGAATCACCAGGGGACTTATGACTTCCTCTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTACGCTTTCATCAATATGGTTTCTCCTTCACACATTGTCGCCTTCTATAAGGCTTTTAATGGGAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTGGCATATGCACGGATTCAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGATGTCGGCCAATCCTTTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGAACACTTTCTATCGAGCAACTTGAATATATGTATTCGTCAACCAGACGGATCATACTCGGGTGATATGTTGGAGAGCCCGAAGGGCAATTCAGATGAAAATCTGGAAAAAGATTGA 2574 0.4297 MDKHSGDSLPVRGTAGLSGISSLNIPNKVGSSAWRIPNATDVFQDSNDVSLFSTSLPVLPHENLNLTDSEQDGQPVDDNLLTVDKVHKEDEGRDPFDNFEINAIGNMLPDDEDELLAGIMDDFDLSGLPNQLEDMDENDLFVNGGGFEMDFESQESLSFGVSKMSISDGIASNGIGSYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGVYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEVRTFRTQVGSPIASSPPGSWAQFSSPVEPNPLGSYSKSPGLGHASPININHLSGLAAILSPHASTSPKIAPIGKDPGRVSNQMFASSGGSTHGLAFQHSISFPEKNVNASPRPISAFGESNSNSSSVGTLSGPQFLWGSPTPYSENSNTSAWSSSSLGHPFTSSGQRQGFPYAGQRNPFLGSQHHHHVGSAPSGLPLERNFRYFPESPDTSLMSSIGFGNLNHGDGNYMMNMGSRPSVGHGIGHSVTSSEIGSPNFGMMSVPGHGSLFIGNSLYAGPGLSSIEGFGERGRNRRPDNNVNQIESKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKGNSDENLEKD 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05933 857 CDD RRM1_MEI2_like 198 274 IPR034453 -
Vivi3g05933 857 SMART rrm1_1 699 775 IPR000504 GO:0003723
Vivi3g05933 857 SMART rrm1_1 285 353 IPR000504 GO:0003723
Vivi3g05933 857 SMART rrm1_1 200 268 IPR000504 GO:0003723
Vivi3g05933 857 MobiDBLite consensus disorder prediction 1 22 - -
Vivi3g05933 857 MobiDBLite consensus disorder prediction 523 569 - -
Vivi3g05933 857 SUPERFAMILY RNA-binding domain, RBD 699 784 IPR035979 GO:0003676
Vivi3g05933 857 MobiDBLite consensus disorder prediction 443 466 - -
Vivi3g05933 857 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Vivi3g05933 857 Gene3D - 284 380 IPR012677 -
Vivi3g05933 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Vivi3g05933 857 Gene3D - 188 283 IPR012677 -
Vivi3g05933 857 CDD RRM3_MEI2_like 700 785 IPR034454 -
Vivi3g05933 857 MobiDBLite consensus disorder prediction 837 857 - -
Vivi3g05933 857 PANTHER RNA RECOGNITION MOTIF-CONTAINING 118 828 - -
Vivi3g05933 857 CDD RRM2_MEI2_like 283 353 - -
Vivi3g05933 857 MobiDBLite consensus disorder prediction 523 547 - -
Vivi3g05933 857 FunFam Protein MEI2-like 1 283 378 - -
Vivi3g05933 857 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Vivi3g05933 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Vivi3g05933 857 Gene3D - 691 786 IPR012677 -
Vivi3g05933 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Vivi3g05933 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Vivi3g05933 857 Pfam RNA recognition motif 2 697 793 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05933 Vivi-Chr3 142872882 142878848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05933 194 508 Eukaryotic Initiation Factors Gene Family AT3G16380 22.571 2.05e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05933 - - gmx:100812324 1464.13