Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05931 ATGCAGCAAGATCATAGAAAAAAGAATTCGACGGAGATGGACTTCTTCTCTGAGTATGGCGATGCCAACCGGTACAAAATCCAAGAAGTCATTGGTAAAGGAAGTTACGGCGTTGTCTGTTCGGCCATTGACACTCATACCGGTGAAAAAGTCGCCATTAAGAAAATTCACGACATATTCGAGCATATATCTGATGCTGCGCGTATTCTCCGCGAGATAAAGCTGCTTAGACTTCTACGACATCCTGATATTGTTGAAATAAAACACATTATGCTTCCTCCTTCTAGGAAGGATTTCAAAGATATTTATGTTGTTTTCGAGCTCATGGAGTCCGATCTTCATCAAGTCATTAAAGCAAACGATGACTTGACAAAAGAGCACTATCAGTTTTTTCTTTATCAATTGCTTCGAGCACTGAAGTATATTCACACTGCAAATGTCTATCATCGAGATTTGAAGCCAAAAAATATACTGGCAAACGCAAATTGTAAACTTAAAATTTGCGATTTTGGTCTAGCTAGAGTTGCATTCAGTGACACACCAACAACCGTATTTTGGACGGACTATGTCGCTACAAGGTGGTATAGAGCTCCAGAGCTGTGCGGATCCTTTTACTCAAAGTATACACCCGCCATTGATATATGGAGTATAGGTTGCATCTTTGCTGAAGTATTAACAGGAAAGCCTCTTTTTCCTGGAAAGAATGTGGTCCATCAATTGGATCTGATGACAGATCTGCTCGGTACTCCATCACTGGATACTATATCACGGGTGCGCAACGAGAAGGCAAGAAGATATCTTACTAGCATGAGAAAAAAACAGCCTGTGCCATTTGCACAGAAATTTCCAAATGCTGACCCTTTAGCTCTACGACTATTGGAAAGGTTGCTTGCTTTTGACCCAAAAGACCGACCTACTGCTGAAGAGGCACTGGCCGACCCTTACTTCAAGGGACTCGCAAAAGTTGAGAGGGAACCGTCCTGCCAGCCTATCACCAAAATGGAGTTTGAATTTGAAAGACGGAGAGTCACAAAGGAAGAAATTCGAGAGCTAATTTTCCGTGAGATTCTAGAGTATCATCCTCAACTTTTAAAAGACTACATCAATGGAACAGAAAGAACTAATTTTCTCTATCCAAGTGCCGTGGATCAATTCAGAAAGCAGTTTGCTCATCTAGAGGAAAATGGTAAAAACGGTCCTGTTATACCACTTGACCGAAAACATGTTTCTCTTCCAAGGTCAACAATTGTACATTCGTTACCTCAAAAAGAGCAAACTAGTGTTGCTTCTAGCAAACACCGACCTGCACCTGAAGAATATAATAAGATCACTAGAGATACCGAAATTCCAATGCCAAGGACAATCCAGGGACCGCAAAGAATTCCGCTATCAAAGCCTGGTAAAGTTGTCGGGCCGGTTGTTCCCTACGAGTATGGAAATATTGTTAAGGATTCTTATGATCCAAGGGCGTTTATCCGAGGTTCTGTGCTTCCTCCTCAAACTGTTCCGCCAGCATATTACTATCAAAGGCCGCCACCGCCTAGTAGCACTGCTAATCAAGAGAGGTCAGCAAAAGAAACCGATAAGGGTGTCGTGTTGCAAGCCAAACATGGACAACAATGCGGAGTTAATGCGAAGATGGGACCAGATATAGCCATTAACATTGATACAAATCCCTTTTTCATGACAAGGGTAGGAGCAAACAAGTTAGAAAAAGATGATCAAATTGCTATAGAAACAAACTTGTTGCAATCAAAGGCTCAATATGGTGGAGTTGGTGCTGCAGCTGGGGCAACTGCTCATAGAAAAGTTGGAACTGTACAATATGGTATGACAAGAATGTTCTAG 1848 0.4183 MQQDHRKKNSTEMDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRKDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIRELIFREILEYHPQLLKDYINGTERTNFLYPSAVDQFRKQFAHLEENGKNGPVIPLDRKHVSLPRSTIVHSLPQKEQTSVASSKHRPAPEEYNKITRDTEIPMPRTIQGPQRIPLSKPGKVVGPVVPYEYGNIVKDSYDPRAFIRGSVLPPQTVPPAYYYQRPPPPSSTANQERSAKETDKGVVLQAKHGQQCGVNAKMGPDIAINIDTNPFFMTRVGANKLEKDDQIAIETNLLQSKAQYGGVGAAAGATAHRKVGTVQYGMTRMF 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05931 615 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05931 615 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 364 - -
Vivi3g05931 615 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Vivi3g05931 615 MobiDBLite consensus disorder prediction 419 439 - -
Vivi3g05931 615 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Vivi3g05931 615 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vivi3g05931 615 FunFam Mitogen-activated protein kinase 111 339 - -
Vivi3g05931 615 MobiDBLite consensus disorder prediction 503 528 - -
Vivi3g05931 615 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05931 615 CDD STKc_TDY_MAPK 24 361 - -
Vivi3g05931 615 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vivi3g05931 615 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05931 615 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vivi3g05931 615 FunFam Mitogen-activated protein kinase 15 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05931 Vivi-Chr3 142471398 142476616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05931 1 460 MAP Kinase Gene Family AT2G42880 85.129 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vivi3g05931 Pkinase 6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05931 - - gmx:100811788 1090.49