Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05898 ATGCTATCAAACATGGAGATACCAAGTGAAGGTGGAGAAGGATCTTCCCAAAAGAAATTGGGAAGAGGAAAGATCGAAATCAAGAGGATCGAGAACACTACGAATAGACAAGTCACCTTCTGCAAACGCCGCAACGGATTGCTTAAGAAAGCTTATGAATTATCCGTTCTTTGTGATGCTGAAGTTGCTCTCGTTGTCTTCTCGACTCGCGGCCGCTTGTACGAGTATGCTAACAACAGTGTTAGAGCAACAATTGAAAGGTACAAAAAAGCATGTGCTGCTTCTACTAATGCAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAATCATCAAAATTGAGAAGACAGATTCGAGATATTCAGAATCTAAATAGACACATCCTTGGTGAAGCTCTTGGATCATTGAGTCTGAAGGAACTAAAGAATCTTGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACGTTGTTTGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAACTATCTACGCGCTAAGATAGCTGAACATGAAAGAGCTCAACAACAGCAACAAAACCTGATGCCAGAAACAATGTGTGAACAGTCTTTACCTTCACAGACCTATGACAGAAACTTCTTTCCCGTAAATCTTCTCGGATCAGACCAGCAGGAGTATTCGCGTCAAGACCAAACCGCTCTTCAGCTTGTGTGA 741 0.4184 MLSNMEIPSEGGEGSSQKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLMPETMCEQSLPSQTYDRNFFPVNLLGSDQQEYSRQDQTALQLV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05898 246 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Vivi3g05898 246 Coils Coil 109 129 - -
Vivi3g05898 246 Pfam K-box region 104 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi3g05898 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 203 - -
Vivi3g05898 246 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Vivi3g05898 246 FunFam agamous-like MADS-box protein AGL11 32 115 - -
Vivi3g05898 246 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Vivi3g05898 246 Coils Coil 179 199 - -
Vivi3g05898 246 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g05898 246 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi3g05898 246 Gene3D - 32 104 IPR036879 GO:0003677|GO:0046983
Vivi3g05898 246 CDD MADS_MEF2_like 21 95 IPR033896 GO:0000977|GO:0045944
Vivi3g05898 246 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Vivi3g05898 246 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Vivi3g05898 246 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Vivi3g05898 246 SUPERFAMILY SRF-like 21 97 IPR036879 GO:0003677|GO:0046983
Vivi3g05898 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05898 Vivi-Chr3 140839075 140849325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05898 10 246 MADS-box Gene Family AT3G58780 71.255 2.76e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi3g05898 K-box 4.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05898 K09264 - gmx:100808734 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05898 3 140839075 140849325 Vivi3g05898 3 140839075 140849325 ECH