Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05895 ATGGCCACTCACATCACTTCCACCACCACCAACAACAACTACATTATACCAACACCAACACCAACACAATTGTTCCCTAGGAGAAACAATAATCTCCCTATAGATTCAAGGGATTTCCTTGCCCCATCCTCCTCGAGAAAACCGAAAGGCAGACCTTTAGGCTCTAAGAATAAACCTAAACCACCTGTTGTTATTGAGGGAAACCCTAACATGTTAATGGAACCAGTTTTCATTCAGATCCCTGCTGGAAATGATGTTGTTGAGACTCTCATCAACTTGGCTCGAACTCATCAGGCTAATATCACTGTATTGAGTGGTTCTGGTCTTGTCTCTAATGTTACCATTTTGCACCCCATATCTCGTGCCCCTACTTTCCCTATCAAAGCAACATTGCATATGATATCTATCTCTGGAACTTATCTGAATGCTAACTCTGTTGGTATTTCTCACCAATTTATTGCTGACCAATCACGCTCATCGTTTTCCATTTATTTTTGTGGAGATCGTAGACAGGTGCATGGTGGCATTATTGGAGGAAAGATCGAGGCTGTCGGTGTTGTTTCCATTAGGGCCACTCTTTTTAAAAATCCAGGGTTTCATAGGGTAGCTATTGTTAATGGAGTTTTTCAAGAAATTGAAGGGAATGACACAATGTATAATGGCGGTGTCATTCCTAATGCTGATCGTGCTACATATGGATCCACCAACAATGTTATGGGTTCCAGTTCAGCTCAACCAGATTATCAAATGCTTCATCCTTCTCTTCCACCAAATGTGAATTTAATGCAATGGAATCGCAACCGTTCCACCCGTAATGATACTTATTAG 828 0.413 MATHITSTTTNNNYIIPTPTPTQLFPRRNNNLPIDSRDFLAPSSSRKPKGRPLGSKNKPKPPVVIEGNPNMLMEPVFIQIPAGNDVVETLINLARTHQANITVLSGSGLVSNVTILHPISRAPTFPIKATLHMISISGTYLNANSVGISHQFIADQSRSSFSIYFCGDRRQVHGGIIGGKIEAVGVVSIRATLFKNPGFHRVAIVNGVFQEIEGNDTMYNGGVIPNADRATYGSTNNVMGSSSAQPDYQMLHPSLPPNVNLMQWNRNRSTRNDTY 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05895 275 ProSiteProfiles PPC domain profile profile. 69 215 IPR005175 -
Vivi3g05895 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 216 IPR014476 GO:0003680
Vivi3g05895 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 73 202 - -
Vivi3g05895 275 MobiDBLite consensus disorder prediction 1 64 - -
Vivi3g05895 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 75 195 IPR005175 -
Vivi3g05895 275 CDD DUF296 78 181 IPR005175 -
Vivi3g05895 275 MobiDBLite consensus disorder prediction 1 30 - -
Vivi3g05895 275 Gene3D - 74 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05895 Vivi-Chr3 140621462 140622289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05895 30 222 AT-hook Motif Nuclear Localized (AHL) Family AT1G14490 34.146 2.74e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05895 - - vvo:131659070 541.576