Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05886 ATGGCATCATCGAATTCACCCTGTGCAGCATGCAAGTTTCTCCGCCGAAAGTGCACACAAGAATGCGACTTCGCTCCGTATTTTCTCCCCGAAAATCCACAGCGATTCGCGAACGTGCACCGTGTCTTCGGCGCAAGCAACGTCGCTAAGCTCTTAAAAGAGCTCAATGTGGCTGACCGCGAAGACGCGGTGAGATCTTTGGCTTACGAGGCGGAGTCTCGTTTGAAAGATCCTATCTACGGTTGCGTTGGTTTAATCTCGGCTCTCCAACAGCGGTTGCGCGATGTTCAAACCGAGCTCGCTGTAGCGAAGAAAGAACTGTCGAGTTATAATTCGAATCCTCAGGTTATGCAGTTCTTGTTTGGGAATGCTGGTGCAGGGTTGCAGCAACAGCATCAACAATGGAATAACTCACAGTTTGCAGGTGTTGCTAATGGTAACTACTCGTATAATTTTCCGCATGAGATGCTCGGAGGAGCGGGATTGGTTACTCGAGATGTTCAGCAGGAGCAAGAGCTTCTTGAAGCTCAGCAGATAGTTGCTGCTCAGCAAGATTATTTGCTTAGGTTTAGCGGACTTCACGTCGGTGGTGGCGGTGGTGCTGCTGCTGCTGTTTCTGGTCATGCTGATATGGCTCATTCATTGGGGATAGGAAGCTTTGAGAATGGAGGTAGCGGCGGAAGTAGCAGCGGCTGTGGTTATTATCAGATTCAGCAACAACAACAGGGAGAGCCGCAGCAGCAACACCAGAACTATAATCCTCATGTTGGTGTTGCTGCTGCGGCGAATCCAGCTGAGGCGCCGGGTTTGTTATCTCCTCAGAATCAGGAGAATGGTGGTGAGGATGGTAGGAGTGTTGGTAGCACTCATCGTTCTAGTTGA 882 0.5023 MASSNSPCAACKFLRRKCTQECDFAPYFLPENPQRFANVHRVFGASNVAKLLKELNVADREDAVRSLAYEAESRLKDPIYGCVGLISALQQRLRDVQTELAVAKKELSSYNSNPQVMQFLFGNAGAGLQQQHQQWNNSQFAGVANGNYSYNFPHEMLGGAGLVTRDVQQEQELLEAQQIVAAQQDYLLRFSGLHVGGGGGAAAAVSGHADMAHSLGIGSFENGGSGGSSSGCGYYQIQQQQQGEPQQQHQNYNPHVGVAAAANPAEAPGLLSPQNQENGGEDGRSVGSTHRSS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05886 293 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vivi3g05886 293 MobiDBLite consensus disorder prediction 269 293 - -
Vivi3g05886 293 MobiDBLite consensus disorder prediction 238 254 - -
Vivi3g05886 293 Coils Coil 86 113 - -
Vivi3g05886 293 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Vivi3g05886 293 MobiDBLite consensus disorder prediction 238 293 - -
Vivi3g05886 293 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05886 Vivi-Chr3 140289101 140290175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05886 1 138 AS2 family AT5G66870 63.768 2.12e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi3g05886 LOB 2.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05886 - - psat:127080212 460.685