Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05843 ATGTTATTGGGTCTCAACACAAATGGAAAAGCTGTGTTTGGAAATGTCCAACAACCCAATGCTCTATGTGTCGAAATGTTGGGTGTAGATTTAATAGAGGGTGAGGGGCGACAAAGAGGTAGGGGCCAAGGTATTAAGCTTGTTGGTCTTCAACAAGCTTATGATGACCTTAAGTTGAATCAGTTTTCTAGCGAAGAAAGTAAACTATATAAAACTAGAATGTATATTATGTTATTATTTGGTAGGTTTCTATTTCCCGAAGGTACGGGGAATAGTGTCAATTTTATGTACTTGTGTCTACTTGAGGACATTGATGCAATTAAGACGTATAGTTGGGGTTCGACGGTGTTGGCATACCTCTATAGCTTCTTGTGCAAATGTGCAACAAAGGATAGTTGTACATTTAATGGATGTGCATTCTTTCTACAAGCATGGTTTAATGCAACTGGGTTGGATTACACCAATACGCCTGTAAACAAAATCATTTTTTACTGCCAACTATTGGATCGACTTCGACCCCAAGATTTTATTTGGAGACCTTACTTGGGACTGGACCATGTACCCGAACCTAGAGAGGCGGCTGTTTGGACGGCAAAATCACCCATCATACGATTTGATAATAGCAAACAGTATATGGCGGGAGGCACAAGACCAAACCCACTCGACAGGGAGCACATGTTACGTGCATTGAAGGCGCTGTCTCTGCCAACGTCAGAAGTTAATCTCCCAGATGGGCTATTGGCAGTTCCTCTTTTATGTCATCAGAGAATCGCTTTATCGTGGATGGTTCAAAAGGAAACATCAACTTTAAGCTCTTCCGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACTGTGTCAACTATTGCTTTAATACTAAAGGAAAGGCCTACGTTGCTCGAGGCGTGCAACACTGCACAAAATAGTGTATTAGAAATCGTGGATTTGGATGATGATCCACTTCCTGAGAATGGTGTAATGAAGAAGGAATTTGACGCGCGTCAAGATACATCTAGAAATGGAAAAGCGATCACAAGTGTGAATTCTTCGGTTCATGCAAAAGGCAGGCCATCTGCAGGAAACATACAATTTAACTAA 1101 0.4133 MLLGLNTNGKAVFGNVQQPNALCVEMLGVDLIEGEGRQRGRGQGIKLVGLQQAYDDLKLNQFSSEESKLYKTRMYIMLLFGRFLFPEGTGNSVNFMYLCLLEDIDAIKTYSWGSTVLAYLYSFLCKCATKDSCTFNGCAFFLQAWFNATGLDYTNTPVNKIIFYCQLLDRLRPQDFIWRPYLGLDHVPEPREAAVWTAKSPIIRFDNSKQYMAGGTRPNPLDREHMLRALKALSLPTSEVNLPDGLLAVPLLCHQRIALSWMVQKETSTLSSSGGILADDQGLGKTVSTIALILKERPTLLEACNTAQNSVLEIVDLDDDPLPENGVMKKEFDARQDTSRNGKAITSVNSSVHAKGRPSAGNIQFN 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05843 366 Gene3D - 224 315 IPR038718 -
Vivi3g05843 366 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 225 312 - -
Vivi3g05843 366 Pfam Plant mobile domain 1 146 IPR019557 -
Vivi3g05843 366 MobiDBLite consensus disorder prediction 339 366 - -
Vivi3g05843 366 Pfam SNF2-related domain 263 299 IPR000330 GO:0005524|GO:0140658
Vivi3g05843 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 296 IPR027417 -
Vivi3g05843 366 MobiDBLite consensus disorder prediction 334 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05843 Vivi-Chr3 138261738 138271594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05843 222 363 RAD5 or RAD16-like Gene Family AT1G61140 51.007 3.03e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi3g05843 PMD 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05843 - - vvo:131659045 733.021