Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05817 ATGGATAAACCTCAAGGCTCTATGAACAAGCCTAAACCCTCTATTAAGATTGAGGAAGACACTAATACCACTATGAAGCAAATTCTTATCAAAATCCCTGCTGGAAACGATGTACTGGAGTCCATCGTCAATGTTGCTTTGCATCATCAAGCTAATATTAGAGTACTAAAAGGTAGTGGTCTTATCTCTGATATTACTTTTCATAATCCAGTGTCCCATGCCTATGTATTCACATTACATGGGCCCTTTCAAATGACATCTATATCAGGAGAATATGTTAATACCAACTATGGTTGTGTTCCTTCCAGGCTCATCAATGAACCTACTTATTCCTCCTTTTCCATTTTCCTAACTCGTGGTGATGGAAAAGTGTTTGGTGGGATTGTTCAAGGAAAGGTTAAGGCTGCTGGTGATATTCTAATCACCGCCACTCTTTCAAAGAAGTCCAAGTCTTTTAGGGGAGGCCACCATCATTTGAAGTATTCAAGAATTTAA 495 0.3879 MDKPQGSMNKPKPSIKIEEDTNTTMKQILIKIPAGNDVLESIVNVALHHQANIRVLKGSGLISDITFHNPVSHAYVFTLHGPFQMTSISGEYVNTNYGCVPSRLINEPTYSSFSIFLTRGDGKVFGGIVQGKVKAAGDILITATLSKKSKSFRGGHHHLKYSRI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05817 164 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 145 IPR014476 GO:0003680
Vivi3g05817 164 SUPERFAMILY AF0104/ALDC/Ptd012-like 24 143 - -
Vivi3g05817 164 Pfam Plants and Prokaryotes Conserved (PCC) domain 28 144 IPR005175 -
Vivi3g05817 164 ProSiteProfiles PPC domain profile profile. 22 164 IPR005175 -
Vivi3g05817 164 Gene3D - 26 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05817 Vivi-Chr3 136849925 136850419 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05817 3 143 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 30.769 4.50e-21 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05817 - - vvo:131640436 300.827