Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05815 ATGGATAAACCTCAAGGCTCTATGAACAAGCCTAAACCCCCTATTAAGATTGAGGAAGACACTAATACCACTATGAAGCAAATTCTTATCAAAATCCCTGCTGGAAACGATGTAGTGGAGTCCATCGTCAATGTTGCTTTACATCATCAAGCTAATATCACAGTACTAAAGGGTAGTGGTCTTATCTCTGATATTACTTTTCATAACCCAGTGTCCCATGCCTATGTATTCACATTACATGGACCCTTTCAAATGACATCTATATCAGGAGAATATGTTAATACCAACTATGGTTGTGTTCCTTCCGGGCTCACTGATGAACCTACTTATTCCTCCTTTTCCATTTTCCTAACCCGTGGTGATGGAAAAGTGTTTGGTGGGGTTGTTCAAGGAAAGGTTAAGGCTGCAGGTGATATTCTAATCGCCGCCACTCTTTCAAAGAAGTCCAAGTCTTTTAGGGGAGGCCACAATCATTTGAAGTATTCAAGAATTTAA 495 0.4 MDKPQGSMNKPKPPIKIEEDTNTTMKQILIKIPAGNDVVESIVNVALHHQANITVLKGSGLISDITFHNPVSHAYVFTLHGPFQMTSISGEYVNTNYGCVPSGLTDEPTYSSFSIFLTRGDGKVFGGVVQGKVKAAGDILIAATLSKKSKSFRGGHNHLKYSRI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05815 164 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 147 IPR014476 GO:0003680
Vivi3g05815 164 Gene3D - 26 161 - -
Vivi3g05815 164 MobiDBLite consensus disorder prediction 1 20 - -
Vivi3g05815 164 Pfam Plants and Prokaryotes Conserved (PCC) domain 28 143 IPR005175 -
Vivi3g05815 164 ProSiteProfiles PPC domain profile profile. 22 164 IPR005175 -
Vivi3g05815 164 SUPERFAMILY AF0104/ALDC/Ptd012-like 24 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05815 Vivi-Chr3 136755255 136755749 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05815 3 149 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.667 4.52e-22 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05815 - - vvo:131640436 290.812