Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05812 ATGGATAAACCTCAAGGTTCTATGAACAAGCCTAAACCTATTAAGATTGAGGAAGACACTAATACCACTATGAAGCAAATTCTTATCAAAATTCCTGCTGGAAATGATGTAGTGGAATCCATCGTCAATGTTGCTTTGCATCATCAAGCTAATATCACAGTACTAAAAGGTAGTGGTCTTATCTCTGATATTACTTTTCATAACCCAGTGTCTCATGCCTATGTATTCACATTACATGGACCCTTTCAAATGACATCTATATCAGGAGAATATGTTAATACCAACTATGGTTGTGTTCCTTCCGGGCTCACCGATGAACCTACTTATTCCTCCTTTTCCATTTTCCTAACCCGTGGTGATGGAAAAGTTTTTGGTGGGGTTGTTCAAGGAAAGGTTAAGGCTGCAGGTGATATTCTAATCACCGCCACTCTTTCAAATAAGTCCAAGTCTTTTAGGGGAGGCCACCATCATTTGAAGTATTCAAGAATTTAA 492 0.3841 MDKPQGSMNKPKPIKIEEDTNTTMKQILIKIPAGNDVVESIVNVALHHQANITVLKGSGLISDITFHNPVSHAYVFTLHGPFQMTSISGEYVNTNYGCVPSGLTDEPTYSSFSIFLTRGDGKVFGGVVQGKVKAAGDILITATLSNKSKSFRGGHHHLKYSRI 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05812 163 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 146 IPR014476 GO:0003680
Vivi3g05812 163 SUPERFAMILY AF0104/ALDC/Ptd012-like 23 142 - -
Vivi3g05812 163 Pfam Plants and Prokaryotes Conserved (PCC) domain 27 143 IPR005175 -
Vivi3g05812 163 Gene3D - 25 159 - -
Vivi3g05812 163 ProSiteProfiles PPC domain profile profile. 21 163 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05812 Vivi-Chr3 136701330 136701821 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05812 3 148 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.000 6.26e-20 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05812 - - vvo:131640436 281.567