Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05801 ATGTGTGAGCAATGTAGCACCGGGGAGCAGCCGGAGGAGCTGCTGTTGTGCGACAAATGTGACAAAGGATTCCATATGAAATGTGTGAGGCCGATTGTTGTGAGGATTCCAATTGGTTCTTGGATTTGCCCTAAGTGTTCAGGGGTGAAGAAAGTGAAAAAGTTCTCGCAAAGGAGAATACTTGATTTCTTCGGGCTTCCAAGGAATTTGCCTGATTTCAGAAGGAATAATTCTTCTTCTTGGGGTTTATTGGTGGCATGA 261 0.4483 MCEQCSTGEQPEELLLCDKCDKGFHMKCVRPIVVRIPIGSWICPKCSGVKKVKKFSQRRILDFFGLPRNLPDFRRNNSSSWGLLVA 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05801 86 ProSitePatterns Zinc finger PHD-type signature. 2 46 IPR019786 -
Vivi3g05801 86 SMART PHD_3 1 47 IPR001965 -
Vivi3g05801 86 ProSiteProfiles Zinc finger PHD-type profile. 1 49 IPR019787 -
Vivi3g05801 86 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Vivi3g05801 86 Pfam PHD-finger 1 47 IPR019787 -
Vivi3g05801 86 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 2 52 - -
Vivi3g05801 86 SUPERFAMILY FYVE/PHD zinc finger 2 54 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05801 Vivi-Chr3 136092156 136093767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05801 1 54 C2H2 Transcription Factor Family AT3G01460 37.037 1.38e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi3g05801 PHD 6.8e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05801 K24406 - vvo:131656706 187.963