Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05789 ATGATTTCATCATTGAGACAACCTAGTATTTCGATCAGTGGTTCTGATGTTGTTTTAGGGAAAAGACATGCAACCCTAGTTCAACCACAATCGTTTTTACCTTGTCTGGTAAGAGGAAAATCACAGAGATCTGTTGTTTCATTGAAGAAGCCTCTTCATCTTGCATGTGTTGGTGTTGGAAATTTTGGGCCAGTGAAGAATTTTGAGAGTTTTGGGAAAAGTGATTTGGTGAAGTGTGGAGCTTATGAAGCTGATGGATCAGAGGTTGAAGGTGGTGGTGTTGGAGCACCATCAGAGGCTGCCAAGAAGGTGAAAATTGGGATATATTTTGCGACTTGGTGGGCTTTGAATGTTGTGTTTAATATTTATAACAAGAAGGTTTTGAATGCGTATCCTTACCCTTGGCTTACTTCGACTCTTTCGCTTGCTTGTGGATCGCTTATGATGTTGATCTCTTGGGCTACTAGGATTGCTGAGGCTCCTAAGACTGATCTTGAGTTTTGGAAGACTTTGTTCCCTGTTGCTGTTGCGCACACGATTGGACATGTAGCGGCTACGGTTAGTATGTCCAAAGTTGCGGTATCATTTACGCATATCATCAAGAGTGGCGAGCCTGCTTTTAGTGTTCTCGTTTCGAGGTTTGTTTTGGGCGAGACCTTCCCTGTGCCGGTCTATCTGTCTTTACTTCCAATCATTGGTGGATGTGCACTTGCTGCTGTGACTGAGCTTAATTTCAATATGATTGGTTTTATGGGGGCTATGATATCGAATCTGGCATTTGTGTTCCGAAATATCTTTTCCAAAAAGGGGATGAAGGGAAAATCCGTTAGCGGAATGAATTACTATGCTTGTTTATCTATTTTGTCCCTTGCGATTCTCACACCTTTTGCGATTGCCGTGGAAGGACCGGCAATGTGGGCTGCTGGATGGCAAACAGCTCTCTCTGAAATTGGACCCCAATTCATATGGTGGGTGGCAGCTCAGAGTATATTCTATCATCTATACAATCAGGTGTCTTACATGTCGTTGGATGAGATCTCTCCTTTGACATTTAGCATTGGAAACACCATGAAACGTATATCTGTCATCGTATCTTCAATTATCATCTTCCACACACCAATTCAGCCTGTCAATGCTCTCGGAGCCGCAATTGCCGTCTTTGGAACCTTCTTATACTCACAGGCTAAACAATAG 1194 0.4288 MISSLRQPSISISGSDVVLGKRHATLVQPQSFLPCLVRGKSQRSVVSLKKPLHLACVGVGNFGPVKNFESFGKSDLVKCGAYEADGSEVEGGGVGAPSEAAKKVKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLACGSLMMLISWATRIAEAPKTDLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFVLGETFPVPVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLAILTPFAIAVEGPAMWAAGWQTALSEIGPQFIWWVAAQSIFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFHTPIQPVNALGAAIAVFGTFLYSQAKQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05789 397 PANTHER SOLUTE CARRIER FAMILY 35 105 396 - -
Vivi3g05789 397 Pfam Triose-phosphate Transporter family 105 393 IPR004853 -
Vivi3g05789 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 148 240 - -
Vivi3g05789 397 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 105 396 IPR004696 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05789 Vivi-Chr3 134710263 134714424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05789 6 396 Antiporters AT5G54800 75.253 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05789 K15283 - gmx:732659 660.988