Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05777 ATGAGTTGTTTTCCATGTTGTGCTTCACAAGAGAGAATCAACAAGAGATCATTGAAGAAGAGTATTAAGGAATACCATGAAGCAAAAACTTTAACCTCATTTGCTAATATCTCTTTTAAAACTGATAGTGGCAAGAGAAGGTTCATTGCAGATGAGATAGCAAAGCTTGGAAAAGGGAATGTTACCTCGAAGGTATTTTCATATCGCGATCTATGCAACGCGACTCAGAATTTTCATCCTCCGAATATGATTGGAGAAGGAGGTTTTGGAAGAGTATACAAAGGAAAGATTAAAAGCACGAATCAAGTTGTTGCTGTGAAGCAGCTTGACAGAAATGGATTTCAAGGAAACAGAGAATTTCTTGTTGAGGTTTTGATTTTGAGTCTTTTGCATCATCAAAATCTCGTGAATTTAGTAGGTTATTGCGCCGAAGGTGACCAGAGGGTTTTGGTGTACGAATATATGGAAAATGGTTCCTTAGAAGATCACTTGCTTGATATAACTCCGGGCAGAAAGCCGTTGGACTGGAAAACTAGGATGAAGATTGCAGAAGGAGCAGCAAAAGGGCTTGAATATCTACACGAAGAAGCGAACCCTCCAGTGATATACCGTGATTTCAAAGCGTCAAACATTTTATTAGATGAAAGCTACAATCCAAAGCTTTCAGACTTTGGACTTGCAAAACTCGGCCCGACCGGTGATAAGTCACATGTATCCACCAGAGTGATGGGAACTTATGGCTATTGTGCTCCTGAATATGCATCAACGGGACAATTAAGTACGAAATCGGATGTGTATAGTTTTGGAGTTGTGTTCTTGGAGATTATCACGGGAAGAAGAGTCATCGACAATTTGAGACCGTCAGAAGAACAAAATTTAGTCATTTGGGCACAACCTCTCCTAAGAGATAGAAATAAGTTCACAAAAATGGCAGATCCATTGCTAGGAGATAACTACCCTACAAAGGGTCTATATCAAGCTCTAGCTGTTGCAGCAATGTGTCTTCAAGAGGAAGCTGATACGCGGCCGTTAATCAGCGATGTAGTTACCGCTCTTGAATTTCTAGCAAACAAGATAGATGAGGAGGGAGAAAAAGTTACAAAAGAGACTTTTGCTTCTCAAGGTGGAAATCATGAATCAAAAGTTGTAAATAATGATGATGATAACGACGATGAGGATGGTGACGACGACAATGATGATGATGATGATGAAGACGAGGATGAGTACGAGGATGGTGATGACGACGATGAAGAGGATGAGGATGGAGAAAATGGTAATGATAATGATAATGATAACGATAACGATGATGACAAAGTTCATAGAAGATATAGTGAATGA 1338 0.3961 MSCFPCCASQERINKRSLKKSIKEYHEAKTLTSFANISFKTDSGKRRFIADEIAKLGKGNVTSKVFSYRDLCNATQNFHPPNMIGEGGFGRVYKGKIKSTNQVVAVKQLDRNGFQGNREFLVEVLILSLLHHQNLVNLVGYCAEGDQRVLVYEYMENGSLEDHLLDITPGRKPLDWKTRMKIAEGAAKGLEYLHEEANPPVIYRDFKASNILLDESYNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYASTGQLSTKSDVYSFGVVFLEIITGRRVIDNLRPSEEQNLVIWAQPLLRDRNKFTKMADPLLGDNYPTKGLYQALAVAAMCLQEEADTRPLISDVVTALEFLANKIDEEGEKVTKETFASQGGNHESKVVNNDDDNDDEDGDDDNDDDDDEDEDEYEDGDDDDEEDEDGENGNDNDNDNDNDDDKVHRRYSE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05777 445 Gene3D Transferase(Phosphotransferase) domain 1 155 378 - -
Vivi3g05777 445 Pfam Protein kinase domain 82 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05777 445 MobiDBLite consensus disorder prediction 386 432 - -
Vivi3g05777 445 FunFam Serine/threonine-protein kinase PBS1 155 370 - -
Vivi3g05777 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vivi3g05777 445 CDD STKc_IRAK 84 353 - -
Vivi3g05777 445 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Vivi3g05777 445 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Vivi3g05777 445 PANTHER OS07G0668900 PROTEIN 3 364 - -
Vivi3g05777 445 Gene3D Phosphorylase Kinase; domain 1 51 154 - -
Vivi3g05777 445 SUPERFAMILY Protein kinase-like (PK-like) 64 358 IPR011009 -
Vivi3g05777 445 MobiDBLite consensus disorder prediction 367 445 - -
Vivi3g05777 445 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05777 Vivi-Chr3 133766526 133768907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05777 60 360 Glycoside Hydrolase AT3G07070 70.432 1.05e-161 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vivi3g05777 Pkinase 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05777 - - gmx:100790474 648.662