Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05660 ATGGGTTGTTTACTAAGTAAAGATAAAGATAAAGATAAAGATTCAGAACCAGAACACAACAATGGTTATAGATATGCTGAATCTTCTGGTCAACACAATCATAGGAACAAGAACAACCATGAACAAGTCAACCATTCAAGAACACCACATCAACCTGAAAAACAAAAACAACCTGCATCATCTCATGTGATTCCTCAGATGACACCTTTGAAGCCTTCATCAGTTTCTGCTCCAAGTCCAAAGCCTGTGATCAAGCAAGACACAAACACAATCCTAGGAAAAGGTTTTGAAGATGTGAGAGATTTCTACACACTTGGAAAGGAATTGGGTAGGGGCCAATTTGGAGTAACATATCTATGTACTGAGAATTCGACTCGGTTGCTTTACGCGTGTAAGTCGATTTCGAAGAGGAAGCTTGTGAGTAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGTCAACCGAATATTGTTGAGTTTAAAGGAGCTTATGAGGATAAGAATTCGGTTCATGTTGTTATGGAGCTTTGTGCTGGTGGGGAGCTTTTTGATAGGATTATTGCTAAAGGACATTATAGTGAAAAAGCTGCTGCTATTATATGTAGACAGATTGTTAATGTTGTTCATATTTGTCATTTTATGGGGGTTATGCATAGGGATCTGAAGCCAGAGAATTTCTTGTTGTCTAGTAAAGATGAAAGTGCTCTTCTTAAGGCCACAGATTTTGGTTTGTCTGTTTTTATTGAAGAAGGAAAGGTGTATCGCGATATAGTTGGAAGTGCTTATTACGTGGCTCCGGAAGTTCTTCGTCGCAGATGCGGAAAGGAAATAGATATATGGAGTGCAGGAGTAATACTATACATCTTACTTAGTGGTGTTCCTCCATTTTGGGCTGAGACCGAAAAGGGAATATTTGATGCAATATTGGAAGGTCATATCGATTTTGAAAGTGAACCGTGGCCTAAAATATCGAACAGCGCCAAGGATCTTGTTCGTAAAATGCTTATACAGGATCCGAAGAAACGCATCACTTCCGCGCAGGTTCTAGAGCATCCATGGATTAAAGATGGAAATGCTTCTGATAAGCCAATAGACAGTGCAGTTCTCTCTCGAATGAAGCAATTCAGAGCTATGAATAAGCTAAAGAAAGTTGCATTGAAGGTCATTGCTGAGAATATGTCGGAAGAAGAGATCCGAGGTTTGAAGTCGATGTTTACGAATATGGACACTGACAACAGTGGCACAATCACCTATGAAGAACTTAAAGCAGGATTGCAAAGACTTGGCTCAAAGCTATCAGAAGCTGAAGTTAAGCAACTCATGGAAGCTGCTGATGTAGATGGAAATGGCACAATTGATTGCATTGAATTCATCACTGCTACAATGCACAGACACAAGTTAGAAAGAGATGATCATCTTTACAAGGCCTTCCAATATTTTGATAAAGACAGCAGTGGGTTTATAACAAGAGATGAACTGGAAACAGCCATGAAAGAATATGGTATGGGAGATGATGCCACAATCAAAGAAATCATATCAGAAGTTGATACAATCATATCTGAAGTTGACACAGATCATGATGGTAGAATCAACTATGAAGAATTCTGTGCAATGATGAGAAGTGGAAACCAGCAACAAGTAAAGATATTCTAA 1674 0.3889 MGCLLSKDKDKDKDSEPEHNNGYRYAESSGQHNHRNKNNHEQVNHSRTPHQPEKQKQPASSHVIPQMTPLKPSSVSAPSPKPVIKQDTNTILGKGFEDVRDFYTLGKELGRGQFGVTYLCTENSTRLLYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDKNSVHVVMELCAGGELFDRIIAKGHYSEKAAAIICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDESALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESEPWPKISNSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNASDKPIDSAVLSRMKQFRAMNKLKKVALKVIAENMSEEEIRGLKSMFTNMDTDNSGTITYEELKAGLQRLGSKLSEAEVKQLMEAADVDGNGTIDCIEFITATMHRHKLERDDHLYKAFQYFDKDSSGFITRDELETAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFCAMMRSGNQQQVKIF 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05660 557 FunFam calcium-dependent protein kinase 1 189 368 - -
Vivi3g05660 557 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Vivi3g05660 557 SUPERFAMILY EF-hand 384 548 IPR011992 -
Vivi3g05660 557 SMART serkin_6 103 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05660 557 Gene3D - 369 553 - -
Vivi3g05660 557 Gene3D Transferase(Phosphotransferase) domain 1 189 368 - -
Vivi3g05660 557 ProSitePatterns EF-hand calcium-binding domain. 530 542 IPR018247 -
Vivi3g05660 557 MobiDBLite consensus disorder prediction 30 52 - -
Vivi3g05660 557 CDD EFh 482 547 IPR002048 GO:0005509
Vivi3g05660 557 ProSiteProfiles EF-hand calcium-binding domain profile. 517 552 IPR002048 GO:0005509
Vivi3g05660 557 FunFam Calcium-dependent protein kinase 1 368 550 - -
Vivi3g05660 557 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g05660 557 MobiDBLite consensus disorder prediction 53 85 - -
Vivi3g05660 557 Coils Coil 425 445 - -
Vivi3g05660 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Vivi3g05660 557 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Vivi3g05660 557 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Vivi3g05660 557 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
Vivi3g05660 557 PANTHER SERINE/THREONINE-PROTEIN KINASE 97 542 - -
Vivi3g05660 557 Pfam Protein kinase domain 103 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05660 557 ProSiteProfiles EF-hand calcium-binding domain profile. 475 510 IPR002048 GO:0005509
Vivi3g05660 557 ProSiteProfiles Protein kinase domain profile. 103 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05660 557 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Vivi3g05660 557 SMART efh_1 443 471 IPR002048 GO:0005509
Vivi3g05660 557 SMART efh_1 521 549 IPR002048 GO:0005509
Vivi3g05660 557 SMART efh_1 407 435 IPR002048 GO:0005509
Vivi3g05660 557 SMART efh_1 479 507 IPR002048 GO:0005509
Vivi3g05660 557 Gene3D Phosphorylase Kinase; domain 1 105 188 - -
Vivi3g05660 557 FunFam Calcium-dependent protein kinase 1 105 188 - -
Vivi3g05660 557 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Vivi3g05660 557 MobiDBLite consensus disorder prediction 1 85 - -
Vivi3g05660 557 SUPERFAMILY Protein kinase-like (PK-like) 100 381 IPR011009 -
Vivi3g05660 557 Pfam EF-hand domain pair 408 468 IPR002048 GO:0005509
Vivi3g05660 557 Pfam EF-hand domain pair 478 547 IPR002048 GO:0005509
Vivi3g05660 557 CDD STKc_CAMK 102 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05660 Vivi-Chr3 125540489 125544806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05660 45 557 EF-hand Containing Proteins AT3G20410 76.550 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vivi3g05660 Pkinase 7.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05660 K13412 - gmx:100798651 922.539