Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05648 ATGCCATCAGCTCAGGATCCATTCTACGTTGTCAAGTCCGAAATCCAAGAATCTATTGATAATTTGCAATCGAGTTTTGAGCAATGGAAACGTAGTTCTGATGCTGTGGAGCGAGGACGGGTTGCGAAGGAGGTTCTTGCTGGATGTGAGAGCATAGAGTGGCAGGTGGATGAATTGGAAAAAGCCATTGCTGTTGCTTCTAAGGAACCTTCTTGGTATGGCATTGATGACGTGGAGATTGAAAATCGGAGGAGATGGACAAGCAGTGCCCGTACTCAGGTTGTCACAATGAAGAAAACAATGGATACTGGAAAGAGCTCAAGCACAACAAGCATTAATGGGATGCACCGAGAACTAATGAGGCTACCGGATTCCTACCAAACTCATACATCCAACCATAATGCTGCCAATGACAATGATGATTTCATAGAATCAGAATCAGATAGACAGATGCTCCTTATAAAGCAACAGGACGATGAGTTAGATGAACTTAGTTTAAGCGTGCAAAGAATTGGAGGTGTTGGACTCACTATCCATGAAGAACTCATGGCACAGGAAAAGATTATAGATGAACTCGGTAACGAGATGGATAGTACATCAAACCGTCTAGATTTTGTCCAAAAAAAAGTGGCAATGGTTATGAAGAAGGCTAGTGCAAAGGGCCAGATCATGATGATTTTGGGCTTGTTGGCTCTGTTCATTTTTCTATTTTTCTTAGTATTCCTTACCTAG 732 0.4221 MPSAQDPFYVVKSEIQESIDNLQSSFEQWKRSSDAVERGRVAKEVLAGCESIEWQVDELEKAIAVASKEPSWYGIDDVEIENRRRWTSSARTQVVTMKKTMDTGKSSSTTSINGMHRELMRLPDSYQTHTSNHNAANDNDDFIESESDRQMLLIKQQDDELDELSLSVQRIGGVGLTIHEELMAQEKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFFLVFLT 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05648 243 Coils Coil 49 69 - -
Vivi3g05648 243 Pfam SNARE domain 188 239 IPR000727 -
Vivi3g05648 243 Coils Coil 182 209 - -
Vivi3g05648 243 Gene3D - 2 104 - -
Vivi3g05648 243 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Vivi3g05648 243 FunFam syntaxin-61 isoform X1 154 215 - -
Vivi3g05648 243 SUPERFAMILY SNARE fusion complex 149 213 - -
Vivi3g05648 243 SUPERFAMILY t-snare proteins 5 102 IPR010989 GO:0016020|GO:0016192
Vivi3g05648 243 SMART tSNARE_6 146 213 IPR000727 -
Vivi3g05648 243 PANTHER GOLGI SNARE BET1-RELATED 125 239 - -
Vivi3g05648 243 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 151 213 IPR000727 -
Vivi3g05648 243 CDD SNARE_Qc 154 211 - -
Vivi3g05648 243 FunFam Syntaxin 10 3 104 - -
Vivi3g05648 243 CDD SNARE_NTD_AtSYP61-like 5 100 - -
Vivi3g05648 243 Gene3D - 158 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05648 Vivi-Chr3 124147758 124152034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05648 55 243 SNARE and Associated Proteins AT1G28490 67.368 3.33e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05648 K08500 - gmx:100793612 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05648 3 124147758 124152034 Vivi7g02745 7 91484330 91488823 PCT