Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05643 ATGTTCTCCACCATTCTCACAAACCGTGTCCCCTCAAAACCCCATCTCCCCAAACCCCATTCCCCCCATTTCCCAATCCGCTGCGGAATCCGCGAAATCCGCGACCGAATCAGCAGCATCAAAACCACCCAAAAAATCACCGAAGCAATGAAACTAGTCTCCGCCGCCCGAGTCCGCCGCGCCCAAGAAGCCGTCATCAACGGCCGCCCCTTCTCCGAAACCTTCGCCGAAGTCCTCCAATCCATCAACCAACAGCTCCAATCCGACGACGTCGAAGTCCCCTTAACCGCCGTTCGCCCCGTCAAAAACGTCGCCCTCGTTGTCATCACCGGCGACCGCGGCTTATGCGGCGGGTTCAACAACTCCGTCGCCAAAAAAGCCGAAGCCAGAGTTCACGAATTGAACAAACTAGGTATAGGCTGTGTTGTCATTAGTATCGGTAAAAAGGGTAACTCTTATTTCAAACGTAGGAGTTTCGTTGAAGTTGATAGATTCATCGAAAACCGCGGTTTTCCGACGACGAAAGACGCTCAGATTATCGCTGATGATGTTTTCTCACTCTTTGTTACTGAGGAAGTTGATAAAGTTGAACTTGTTTACACAAAGTTTGTTTCTTTAGTTAGGTTTAACCCAGTGATTCAGACATTGTTACCGTTATCGAAAAAAGGCGAAGTTTTGGACGCGAATGGGAACTGCGTTGACGCGATGGGAGACGAGTTTTTTAGGTTAACTTCCAAGGATGGGAAGTTGGCTTTGAAGAGAGATGTTGTGAAGAAGAAATCGAGTGACGGGTTTGTTCCGGTTATGGAATTTGAGCAAGATCCTGCTCAGATTCTTGATGCGATGATGCCGCTTTATTTGAATAGTCAAATTTTGAAGGCGTTGCAAGAATCGTTGGCGAGTGAACTTGCTGCTAGAATGGGTGCTATGTCGAATGCGACTGATAATGCTGTTGAGTTGACTAAGAATCTTTCTGTTGTTTATAATAGGGAGAGGCAAGCCAAGATTACTGGGGAGATTTTGGAGATTGTTTCTGGAGCGGAAGCGTTGACACAGATCGATTGA 1065 0.4742 MFSTILTNRVPSKPHLPKPHSPHFPIRCGIREIRDRISSIKTTQKITEAMKLVSAARVRRAQEAVINGRPFSETFAEVLQSINQQLQSDDVEVPLTAVRPVKNVALVVITGDRGLCGGFNNSVAKKAEARVHELNKLGIGCVVISIGKKGNSYFKRRSFVEVDRFIENRGFPTTKDAQIIADDVFSLFVTEEVDKVELVYTKFVSLVRFNPVIQTLLPLSKKGEVLDANGNCVDAMGDEFFRLTSKDGKLALKRDVVKKKSSDGFVPVMEFEQDPAQILDAMMPLYLNSQILKALQESLASELAARMGAMSNATDNAVELTKNLSVVYNRERQAKITGEILEIVSGAEALTQID 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05643 354 ProSitePatterns ATP synthase gamma subunit signature. 336 349 IPR023632 -
Vivi3g05643 354 NCBIfam ATP synthase F1 subunit gamma 30 350 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vivi3g05643 354 Gene3D - 96 221 - -
Vivi3g05643 354 PANTHER ATP SYNTHASE GAMMA CHAIN 23 350 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vivi3g05643 354 FunFam ATP synthase gamma chain 94 220 - -
Vivi3g05643 354 Hamap ATP synthase gamma chain [atpG]. 27 350 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vivi3g05643 354 Gene3D ATP synthase, gamma subunit, helix hairpin domain 251 350 - -
Vivi3g05643 354 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 29 350 IPR035968 GO:0015986|GO:0045261|GO:0046933
Vivi3g05643 354 CDD F1-ATPase_gamma 30 347 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vivi3g05643 354 FunFam ATP synthase gamma chain, chloroplastic 28 95 - -
Vivi3g05643 354 PRINTS ATP synthase gamma subunit signature 328 349 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vivi3g05643 354 PRINTS ATP synthase gamma subunit signature 297 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vivi3g05643 354 PRINTS ATP synthase gamma subunit signature 194 211 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vivi3g05643 354 PRINTS ATP synthase gamma subunit signature 101 120 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vivi3g05643 354 FunFam ATP synthase gamma chain, chloroplastic 246 350 - -
Vivi3g05643 354 MobiDBLite consensus disorder prediction 1 23 - -
Vivi3g05643 354 Pfam ATP synthase 30 350 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vivi3g05643 354 Gene3D ATP synthase, gamma subunit, helix hairpin domain 29 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05643 Vivi-Chr3 123849893 123852068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05643 2 352 Primary Pumps ATPases AT1G15700 68.466 2.14e-172 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05643 K02115 - qsa:O6P43_013711 489.96