Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05639 ATGGAACATATGACAAATATTGGAGATGGAGTGAATGATGAAAATGTGTTGTTTGGAATGATGGAAAGCGCTGGCGGTGGCGGTGGTAGCGGTAGTGGTGGTGGTAACGATGACGTGAGTTTGAAGAAAGGTCCTTGGACAACAGGTGAGGATGCAATTTTGATAGATTATGTAACAAAACATGGTGAAGGGAATTGGAATGCAGTTCAAAGGAATACAGGCTTGAATCGTTGTGGGAAAAGTTGTAGGCTTAGATGGGCTAATCATTTAAGACCTAATTTGAAAAAAGGTGCATTTTCTCATGATGAAGAGAAACTCATTGTTGAACTTCATGCTCAGTTTGGTAACAAATGGGCTAGAATGGCTGCATTGTTGCCGGGAAGAACAGATAATGAGATCAAGAATTACTGGAACACGAGAATCAAACGTCGTCAACGACAAGGACTTCCTCTTTATTCGGACGAACATGATCGTCCGAACACACCAACAACACCTTCACCGTGTGTTACACCAACCGGATCAAACCTTAACAACAACATCACGCCAAAATTCGAGTTTTTCAACCAATATCATCCACAACAACATCATCTTCAACAACATCAACAAGTTCTTCATCCTTTGTCTCCAACACCAACTCATCATCATTCTCCTCTCTCTTCACCACTCCAACATAGGCAACAACAACATCAACAACATTCTTTTTCTCCCCACACATTCTTAGACACTTCATCACCTTCTTCGTCGCTTTCGCCACTTTCCTTCACCTTTCAAAGACCTGCACCACTCTTATCTACGCCGCTTCGCTTCAAACGCTACCGATCAACACCAAATTTCGGACTAATCCCGAATTCCATGACACAAAACTGCTCTTCTTCATTCAATGATCCTTCTTTAACTTCTCATCATCATAATAATCATCACGATAGCTTCCGATTTCCAATGCAATACAACTCAAGTTTTTCTCAATATTTTCATACTCCTTTATTAGAATCCGACCTCGGAGTTTCTTCTTCTTCGTCTTCGCCTTTCTCAACGAAGCTAGAGCTACCTTCAAACCAATATCTAAGATCACACTCAGAACAAGATATTAAACCTAATATTGATTTCAATGATCCAAATAATAGTATCTTAATGGGAGATATTTTAATGGAAGCACAAACCCTAGCATCTGGCCAAAATTCAAAGAAGAGAAATTACTTAAGCTTGAATGAAGGAAATGATATCTTTAATGCATGTCAAAGCATTGATGATTTTACACTAAGCTCTATTTATTGGCCTTCTAATTCAGGTCAAAAACCAAAGGAAGAAGCACCAGATCTAAGCAAATTCATGGATGATGAATTGTCAACAATGCTAACAGTGATGCCTTCATCAACAATGCAAAATCAAGATTGGAATAATAATAATGATAATAGTAATAATAATAACAATGCATTAGAAGTGGGCAATGTTCAATCTTCTAGTGGTGTGATGGGAGATGAAAATTTTGGACTTGATATTAAGCCAATAGCTTCATTGTTTCCTCTTACAAATACTACAAACCATGATGATAGTAATGAAAACAATGGTTGCTATACTTGGGACAGTTTATCTGGACTATGTTGA 1605 0.3813 MEHMTNIGDGVNDENVLFGMMESAGGGGGSGSGGGNDDVSLKKGPWTTGEDAILIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSHDEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEHDRPNTPTTPSPCVTPTGSNLNNNITPKFEFFNQYHPQQHHLQQHQQVLHPLSPTPTHHHSPLSSPLQHRQQQHQQHSFSPHTFLDTSSPSSSLSPLSFTFQRPAPLLSTPLRFKRYRSTPNFGLIPNSMTQNCSSSFNDPSLTSHHHNNHHDSFRFPMQYNSSFSQYFHTPLLESDLGVSSSSSSPFSTKLELPSNQYLRSHSEQDIKPNIDFNDPNNSILMGDILMEAQTLASGQNSKKRNYLSLNEGNDIFNACQSIDDFTLSSIYWPSNSGQKPKEEAPDLSKFMDDELSTMLTVMPSSTMQNQDWNNNNDNSNNNNNALEVGNVQSSSGVMGDENFGLDIKPIASLFPLTNTTNHDDSNENNGCYTWDSLSGLC 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05639 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Vivi3g05639 534 Gene3D - 42 95 - -
Vivi3g05639 534 SUPERFAMILY Homeodomain-like 40 137 IPR009057 -
Vivi3g05639 534 FunFam MYB-related transcription factor 42 95 - -
Vivi3g05639 534 SMART sant 95 143 IPR001005 -
Vivi3g05639 534 SMART sant 42 92 IPR001005 -
Vivi3g05639 534 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 482 - -
Vivi3g05639 534 MobiDBLite consensus disorder prediction 19 43 - -
Vivi3g05639 534 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 90 IPR017930 -
Vivi3g05639 534 MobiDBLite consensus disorder prediction 157 173 - -
Vivi3g05639 534 Pfam Myb-like DNA-binding domain 96 139 IPR001005 -
Vivi3g05639 534 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Vivi3g05639 534 FunFam Transcription factor GAMYB 98 144 - -
Vivi3g05639 534 Gene3D - 98 144 - -
Vivi3g05639 534 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Vivi3g05639 534 MobiDBLite consensus disorder prediction 206 246 - -
Vivi3g05639 534 MobiDBLite consensus disorder prediction 147 173 - -
Vivi3g05639 534 CDD SANT 45 90 IPR001005 -
Vivi3g05639 534 ProSiteProfiles Myb-like domain profile. 38 90 IPR001005 -
Vivi3g05639 534 MobiDBLite consensus disorder prediction 459 481 - -
Vivi3g05639 534 CDD SANT 98 139 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05639 Vivi-Chr3 123785795 123788141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05639 20 220 MYB Transcription Factor Family AT4G26930 53.271 1.24e-67 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi3g05639 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05639 - - lja:Lj6g3v0869180.1 572.778