Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05612 ATGAATAAGATTTTCGTTCGGTGGTGTCATCGTTTCTTCGTCTTCTTGCTTCTTACAAGGGTTTCCTTAACCTCATCACTCCCACACACTCATAATGGTTATGTAGATTCAGATGCTGCAAGAATTCTGAATCAGGAGCAAGGTGATGTTCATCAAATACATTGCTCTAGAGAAAGAAGTAGAATAGCTTGGAAGATCATTCAAGAGTATTTGACGCCAGTTGTGGAGAAAGAAAAATATAATATCTCAAGAAAGTGCAGACTTCACCCTGAAAATGATATCTACAGAGATCAGGAACAGCATAAATCTCATATAGATATAAATGAGTGGCAGTGTGGATACTGTAAGAAAACTTTCTACGAAGAGAAACATCTCGATCAGCACTTTGATAACAGACACTCCAATTTACTTAATTTGAATGAAAGCCAGTGCTTAGCAGATGTATGTGGAGCATTGCACTGTGACCATGACATCAATTCCAGGTCAAAAAAATCAAAGTGCAATCCTGCTGCAGCAGCAAGAAATAAACATCTATGTGAGACCTTAGCAGACAGTTGTTTTCCGGTTAACACAGGTCCTGCGGCAAGCCGGCTTCATGAATTCTTCTTGCATCAATTCTGTGATGCCCATAGTTGCACTGGAAGTGGAAAGCCTTTCTCCAGAGGGCGCAGGAAAAAGAAAAACGGGTTCTACATTGCTGCCTCCATTTTTCTTGTGACGCTGCTGTTATTTTACTATCTATACATTTATTTATATCAAAGAGGATTGAAAAGGGAAACTCAAATGCTGAAACGTATCTCACAAGCTGGCCGAAAAAAGAAGCCATCTTGA 831 0.3959 MNKIFVRWCHRFFVFLLLTRVSLTSSLPHTHNGYVDSDAARILNQEQGDVHQIHCSRERSRIAWKIIQEYLTPVVEKEKYNISRKCRLHPENDIYRDQEQHKSHIDINEWQCGYCKKTFYEEKHLDQHFDNRHSNLLNLNESQCLADVCGALHCDHDINSRSKKSKCNPAAAARNKHLCETLADSCFPVNTGPAASRLHEFFLHQFCDAHSCTGSGKPFSRGRRKKKNGFYIAASIFLVTLLLFYYLYIYLYQRGLKRETQMLKRISQAGRKKKPS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05612 276 SUPERFAMILY Expressed protein At2g23090/F21P24.15 100 135 - -
Vivi3g05612 276 ProSitePatterns Zinc finger C2H2 type domain signature. 112 133 IPR013087 -
Vivi3g05612 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 135 IPR013087 -
Vivi3g05612 276 PANTHER ZINC FINGER PROTEIN-RELATED 21 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05612 Vivi-Chr3 121489299 121492933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05612 33 276 C2H2 Transcription Factor Family AT5G63280 58.537 1.61e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi3g05612 None None None