Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05604 ATGGCTGAAGTTGTTCAAGAACCTGTCGTAGTTTCAGATCCTTCCCTGATCGAAGTCAAACTCTTTAACCGCTGGAGCTTCGATGATATCCAGGTTTCTGATGTGTCTCTGGGTGATTACATTGGAGTTTCGGCATCAAAGCATGCGACATATGTTCCACATACTGCTGGTAGATACTCAGTGAAAAGGTTTAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTTACAAACACTCTCATGATGCACGGGAGGAACAACGGAAAAAAGCTTAAGGCGGTTGGAATCATTAAGCACGCCATGGAGATTATTCACTTGCTTACTGATCAGAACCCAATTCAGGTTATCGTTGATGCTGTTATCAACAGTGGTCCTCGTGAAGATGCAACCCGAATTGGTTCTGCTGGAGTTGTGAGAAGACAGGCTGTGGATATCTCACCCCTTCGCCGTGTTAATCAAGCCATCTATCTTTTAATTACCGGAGCACGTGAAGCGGCCTTCAGAAATATTAAGACAATTGCTGAGTGTCTGGCTGATGAACTTATTAATGCAGCAAAAGGTTCTTCCAACAGTTATGCGATCAAGAAAAAAGATGAAATCGAAAGAGTAGCTAAGGCAAATCGTTAA 624 0.4343 MAEVVQEPVVVSDPSLIEVKLFNRWSFDDIQVSDVSLGDYIGVSASKHATYVPHTAGRYSVKRFRKAQCPIVERLTNTLMMHGRNNGKKLKAVGIIKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLITGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05604 207 CDD uS7_Eukaryote 20 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vivi3g05604 207 NCBIfam 30S ribosomal protein S7 18 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Vivi3g05604 207 PANTHER RIBOSOMAL PROTEIN S7 14 207 IPR000235 GO:0006412
Vivi3g05604 207 FunFam 40S ribosomal protein S5 3 207 - -
Vivi3g05604 207 Gene3D Ribosomal protein S7 domain 4 207 IPR036823 -
Vivi3g05604 207 SUPERFAMILY Ribosomal protein S7 20 207 IPR036823 -
Vivi3g05604 207 ProSitePatterns Ribosomal protein S7 signature. 73 99 IPR020606 GO:0003723|GO:0003735|GO:0006412
Vivi3g05604 207 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 207 IPR000235 GO:0006412
Vivi3g05604 207 Pfam Ribosomal protein S7p/S5e 61 207 IPR023798 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05604 Vivi-Chr3 121431620 121433934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05604 18 207 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 90.000 7.34e-130 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05604 K02989 - gmx:100305898 364.385