Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05603 ATGCTCAAACAAACTAAGGTGTTTCGTGATAATCAAACTGTGCAAGAGAGGATAATGGACTCGAATGATTTGGAGCGTGAAAGAGGAATCACTATTCTGAGTAAAAACACATCTGTTACTTATAAAGATGCCAAGATTAATATCATTGATACTCCAGGTCACTCTGATTTTGGGGGTGAAGTAGAACGCATCTTGAATATGGTTGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGGTTTGTCTTAAAGAAGGATTTAGAGTTTGGTCACGCGGTTGTTGTGGTTGTGAATAAAATAGATAGGAGTTCTGCTCGCCCTGATTTTGTTGTCAAATCTACCTTTGAACTAAGGGTGGCAAAGCGGGCCAGGAAAAACTAA 399 0.401 MLKQTKVFRDNQTVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKDLEFGHAVVVVVNKIDRSSARPDFVVKSTFELRVAKRARKN 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05603 132 Pfam Elongation factor Tu GTP binding domain 2 120 IPR000795 GO:0003924|GO:0005525
Vivi3g05603 132 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 108 - -
Vivi3g05603 132 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 20 35 IPR031157 -
Vivi3g05603 132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 122 IPR027417 -
Vivi3g05603 132 Gene3D - 1 132 IPR027417 -
Vivi3g05603 132 PRINTS GTP-binding elongation factor signature 99 108 IPR000795 GO:0003924|GO:0005525
Vivi3g05603 132 PRINTS GTP-binding elongation factor signature 27 35 IPR000795 GO:0003924|GO:0005525
Vivi3g05603 132 PRINTS GTP-binding elongation factor signature 47 57 IPR000795 GO:0003924|GO:0005525
Vivi3g05603 132 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 132 IPR000795 GO:0003924|GO:0005525
Vivi3g05603 132 NCBIfam small GTP-binding protein domain 25 112 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05603 Vivi-Chr3 121425156 121426440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05603 17 108 Eukaryotic Initiation Factors Gene Family AT3G22980 43.478 8.61e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05603 K06207 - vvo:131658888 258.07