Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05584 ATGACTAAAAGATCTATTTTACAGACAAATCATGAGGTTCTATATTGTGATGAAGAAATAAAGCCTAAGGTTGGACAAATTTTTGATTCACTCGAAGATGGTGAATTTTTTTACAAAAGATATGCACATAGTGTTGGTTTTAGTGTGCGTTGTTCATCGGAAAATAAAAATAAAGATGGTGTCATACGTTGGAAGTACTTTGTTTGCTCTAAAGAGGGTTACAAACCAAATGTATCAAAAGAGAACGAAGTGAGTGAATTGGGAGTTAAAGTCAAGAGGAGGAGTCTTACTAGAGAAGGATGTGATGCAAAAGTTGCTTTCAAGTTGTTAGAGGGAGGAAAATATGAGCTAACTCGATTTCAAGAGAGTCATACACATGCACTTGCCTCACCTAAAAAGAGACAATTTCTTAGATCTGCAAGAAAAGTGAATAATATTCATAAGAGTATAATGTTTGCAAATAGTAGAGCAAATATTGGTCCTTCAAAAACATACCATTTGTTGAAGGAACAACTAGGTGGTTATGAAAATATTGGGTGCACACAGAGAGATCTACAAAATTCGTTTAGAGATTTAAAGACCTTAATCAAAGATTCAGATGCATATGTCTTCATTGATAACTTTAAAAGGAAGCAAGAAGTGAATCCCTCGTTTTATTTTGCATACGAGGTTGATGTTGAAGATCGACTGAAACACGTTTTCTGGGCAGATGGAATTTGTAGAAAAAATTACTTCTTATTTGGAGATGTAATGTCGTTCGACACTACATATGAAACAAATAAATATTCCATGATATTTGCACCATTTACTGGAGTGAACCATCATAGACAGTCTGTTACTTTTGGAGCTGCCTTCTTAGCAAATGAGAAAGCTGATTCATTCATTTGGTTATTTGAAAAGTTTTTGGAAGCTATGGGGGGGAATAAACCAAATCTTATAATAACAGATCAAGACCCTGCCATGAAAATTGCAATTGAGAAGGTCTTTGATTCTTCTGCACATAGGTTTTGTATGTGGCACATCATGAAAAAAGTTTCTGAAAAGGTGGGTGTTTCCTTGAATTCTAATGAGGAGTTCAATAATAAATTTAAGTCATGTGTTTGGGGATCAGACACTTCTGAAAATTTTGAAGCATCATGGAAATCCATCATGATTGAGTTTGGATTGAAAAAGAATGAATGGTTGTCACACATGTATAATATTCGAAATATGTGGATCCCGGCTTACTTCAGAGATATATTTTTGGCTGGCGTATTGAGAACAACCTCAAGATCAGAGAGTGAAAATTCCTTCTATGGTAACTTTTTAAATCCTACTATTGGCTTGGTAGAGTTTTGGATGAGATTTGAGTCTGCTATAGAAGCTCAAAGGCATAAAGAGTTACTTGCTGATAATACTTCACTTCATTCTTTACCAATGCTAAAATTAGACCGTGGATTAGAGAGGCATGGTAGGGATATTTACACTCGTGAAAACTTTTATATATTTCAAAATGAATTATGGATTGGATGTATAGACTGCGGAGTAGAAAATATAAATCAAAATGATGGTGTGGATGTTTTACACATAATTGATAATAGTGTGACAAATGGTAAAGTAAGCGAGGTGGTTTATAATGTTTCTGATTATAGCTTGACTTGTTCGTGCAATATGTTTCAATCACAAGGCATACCATGTAGACACATACTCTGTGTTTTAAGAGGAAAAGGTTTAAATGAAATACCGAACAAGTATATTCTAAATAGATGGACCAAAATGGCGACCAACAAGTCTGTTTTTAATGTTGATGGAAAGGACTTAGAAGGTTTGTCCGAAACAAAAAATGAGAGACAACTCATTTCAGAGGTATGGGATCATTTATATATGTGCATGCATATGGCTGGGCAGTGTAAGGAGAAGTTGCTTCTTATAACAAATGGATTTGCTAACATTAAAAAACAATTATCTGAATTTGAAGATGATTCTTTACCCACCAAAACAAATGAGCTAGAGTCTTTTATTGGTTTTGATCTTTCTAAAGAAGTGAAAATTCATCCCCCACAAATTTCAAAGACAAAAGGAAGTGGTAAACGAATTAAAGGAGGAAAAGAGAAGGCTATTGAACAACAACAGAAAAGATCCAGACTTTGTAAATCATGTGGCCAATATGCATCTCATGACACTCGTAATTGTCCATCGAAATCATCTCCTTAA 2193 0.3438 MTKRSILQTNHEVLYCDEEIKPKVGQIFDSLEDGEFFYKRYAHSVGFSVRCSSENKNKDGVIRWKYFVCSKEGYKPNVSKENEVSELGVKVKRRSLTREGCDAKVAFKLLEGGKYELTRFQESHTHALASPKKRQFLRSARKVNNIHKSIMFANSRANIGPSKTYHLLKEQLGGYENIGCTQRDLQNSFRDLKTLIKDSDAYVFIDNFKRKQEVNPSFYFAYEVDVEDRLKHVFWADGICRKNYFLFGDVMSFDTTYETNKYSMIFAPFTGVNHHRQSVTFGAAFLANEKADSFIWLFEKFLEAMGGNKPNLIITDQDPAMKIAIEKVFDSSAHRFCMWHIMKKVSEKVGVSLNSNEEFNNKFKSCVWGSDTSENFEASWKSIMIEFGLKKNEWLSHMYNIRNMWIPAYFRDIFLAGVLRTTSRSESENSFYGNFLNPTIGLVEFWMRFESAIEAQRHKELLADNTSLHSLPMLKLDRGLERHGRDIYTRENFYIFQNELWIGCIDCGVENINQNDGVDVLHIIDNSVTNGKVSEVVYNVSDYSLTCSCNMFQSQGIPCRHILCVLRGKGLNEIPNKYILNRWTKMATNKSVFNVDGKDLEGLSETKNERQLISEVWDHLYMCMHMAGQCKEKLLLITNGFANIKKQLSEFEDDSLPTKTNELESFIGFDLSKEVKIHPPQISKTKGSGKRIKGGKEKAIEQQQKRSRLCKSCGQYASHDTRNCPSKSSP 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05584 730 Pfam SWIM zinc finger 544 566 IPR007527 GO:0008270
Vivi3g05584 730 MobiDBLite consensus disorder prediction 680 703 - -
Vivi3g05584 730 Pfam FAR1 DNA-binding domain 37 129 IPR004330 -
Vivi3g05584 730 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 17 611 IPR031052 GO:0006355
Vivi3g05584 730 Pfam MULE transposase domain 250 344 IPR018289 -
Vivi3g05584 730 ProSiteProfiles Zinc finger SWIM-type profile. 538 570 IPR007527 GO:0008270
Vivi3g05584 730 SMART 26again6 545 572 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05584 Vivi-Chr3 120384096 120389200 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi3g05584 MULE 6.1e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05584 - - mtr:112420857 1045.8