Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05583 ATGTCGAGTTTGCCCCATTATCTGTCTATGAACTCTGCATTCGGTGTTGGTGGTGCTACTGCTCTTTCTCATTCTTCCGTTGCTAACTCTCAATCTCCCGCCGGTAACCGGGATCGGAGCATGGCTTCTTCTGAACAACTCGTTCTCGAACTCAGTACCCCAGAGCTTCGTGAAAATGCTCTTCTCGAACTCTCTAAGAAGAGAGAGCAATTTCAAGATCTTGCTCCCTTGCTATGGAATTCATTTGGCACTATTGCAGCACTTTTGCAGGAAATAGTGTCGATATACCCAGTGCTATCACCACCCAATCTCACTCCTGCACAATCAAATCGAGTGTGCAATGCCCTTGCTCTTCTTCAGTGCGTAGCATCTCACCCGGATACAAGGATGCTATTCCTCAACGCTCATATTCCATTGTATCTGTACCCCTTCCTGAACACCACAAGTAAGTCAAGACCTTTTGAGTACTTGAGGCTGACTAGTCTTGGTGTCATTGGTGCATTAGTGAAGGTCGATGATACCGAGGTTATTAGTTTTCTGCTTTCTACTGAAATAATTCCACTATGCCTGCGCACTATGGAAATGGGGAGCGAGCTCTCCAAAACAGTTGCAACATTTATTGTTCAAAAGATTCTGTTAGATGACGTGGGCTTGGACTACATCTGTACTACTGCTGAGCGTTTCTTTGCAGTAGGTCGAGTTCTTGGAAATATGGTGGCAGCTCTTGCTGAGCAACCATCATCTCGTCTGTTGAAGCATATCATTCGATGCTATCTTCGCCTGTCAGATAACCCAAGGGCTTGTGACGCACTAAGAAGCTGTCTTCCAGACATGTTAAGAGACGCTACTTTCAGCAGCTGCTTACGTGAGGACCCCACAACTAGGAAGTGGCTGCAACAATTGCTGCACAATGTTGGAGGGAATCGGGTTCCCGCACTTCAAGGTGGAGGAGGTTTTGATCATCTAATGGTGAATTGA 978 0.4622 MSSLPHYLSMNSAFGVGGATALSHSSVANSQSPAGNRDRSMASSEQLVLELSTPELRENALLELSKKREQFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRKWLQQLLHNVGGNRVPALQGGGGFDHLMVN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05583 325 SUPERFAMILY ARM repeat 52 280 IPR016024 -
Vivi3g05583 325 Gene3D - 36 306 IPR011989 -
Vivi3g05583 325 FunFam Cell differentiation protein RCD1 38 308 - -
Vivi3g05583 325 PANTHER UNCHARACTERIZED 38 309 IPR007216 GO:0006402|GO:0030014
Vivi3g05583 325 Pfam Cell differentiation family, Rcd1-like 47 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05583 Vivi-Chr3 119888219 119896636 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vivi3g05583 Rcd1 1.3e-130 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05583 K12606 - gmx:100784529 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05583 3 119888219 119896636 Vivi7g02714 7 91078165 91080487 PCT