Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05537 ATGGATATTGAGTTCTCAATGGCGTTTCCTCCTTATCGCCCATCTCACTTCCGTAGCAAAACTTATAGCACCCTTGTCCGTATTCTCTCCCACGTCTCTCCTTCCGCCGTTCCAACTCAATCCCTCAATATTCCTGATAATGGCAAGGTTGGAATGGGGCAAGAAAACCAGGAACTGGAACCGGTTCGTTCTGATGTTATGGATCCCAAGGGTTCTATACCCTTGAAGGAAATGCATGATGTTCATGAGATCGGTGAGAGCGTTGGAGACAGGAGCAAGGATTTTAGAACCAATGAAATTGTCCTTGACGATGAAGACTCTTTGATGGGGATAGACGAACCATCCTCACAAACAAATGGTTTTCATTTGGAACAAATAATGGACGAATTGGAGCTTGTTGTGAAAGGGACTGAAGATCCTGTTTGCAATGATGGTTTAATCCCTTTGAACTGCGAGAAACAGAACAGTGGTAGTGAAGTTGATTTGATGGATTACCGAGTAGAGAATGTTGAGTTTCTGCATTGTGGTACAAACACGTCTGGAATTGTAAGTGAGGTACGAACAGATTTACCTGTGGAGCTTAATCAACTTGACTCAGAAGTCTTTCATGTGGTTGAGTCAACAAAGGGAAAAGCTTCTGATTCTGCAATCAGTACAACATGTATAAATCATGATAGTCAACAAAAGGAAACAGAATTGGTGAAACCGGTTTGTCCTGTAACGAGATCGCTTCCTACAATTCAAGAGAGTGAATTTGAGAAGGGAGAACAGTATGGTCATCAGGTTGATGAAGTAGCTCATAGTTCTATAGATCATGATAAGATTAATGAAGCATTGAATATGACAGAGGATGGTGGATTACTGGATTCAACAATTTTGGAAGATAAAAACAAAACACAAAATAATGAGAAACCAGAAAAGTTAATTTGTGCGACAGATGCTACAAATTCTTCCGATCTTCTGGTTGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGAGATTTTGCAATGGATGGAGACACATTTGACGTGTCTTCTGCTGTTGCTACAATATCAGAACAGATGAAAGTGGATGAGATTCAGAAACCAGGGAATTCATTTGGAAACAAGGCACCTCCCTTCAATGCCGTACCAACATATTTAACCCCAAAGCAAGTCTTGCACAAAGGATTCATGGAAGAAACCACTATCAAAGATCATGGGAACTCGTTTGCTGTACAGGAGGTAATTGATGTCGGTAGAAAGCGAAAATATGTTCCTGATTCAGAGGAGGAGGAAGATAAAAAGAAGGAGATGGTTGATGCCAGTAAAAGTAAACGCGGTCCTGGTTCTAAAGAGAAGAAAAATAAAAAGAAGAAGAACTATCGAAAGAACAGAGCAGAAAAGAACAGAGAACAAGGTGTTAAAAGGTTGAAGCTGATTCCTGTACAGAAACCAAAAACCATCTCATATTGTCGCCATTATATCAAAGGAAGGTGCAATGAGGGTGACAAATGCAAATTCTCTCATGATATTGTTCCTGAAACAAAGTCCAAGGCATGTGTTCACTTTGCTCGTCACTCTTGTATGAAAGGGGATGATTGCCCATTTGATCACCAACTCTCTAAGTATCCTTGTTCTAGTATGGTTTCTAATGGCTCTTGTACTAGAGGTGATGCTTGTTTGTTTTCACACCAGGTACCGATCAACCAATGTATACCTACGCCTACAAATGCTTGCAAACCAGAGTCAAAGACTCCTCTTCCATCGGGAAATACAAATTTCAGTACGCCACTGAATAATCATGGCTCTAGTTCTGTCCAACAAAACCACTCGACCAATTCTAAGGGAACAGACACTCCGCAGAGAAAGCCTACCTCCGCACCCAAAGGAATTAGATTCATAAATGTTGCTAACTTATCATCTAGTACGCCAAAACAAGACACGACAACACCAAACAAGGGAAGTCTTGTCCACAATGGGACATGTGCAGATAAAGGTCAAAATACTGCAGAAGTTACTAAGAAATTTTCAGCTGTCACGCCCAAGGGAATTAACTTTCTTTCATTCGGAAAAGGTTCTGTTTGCAGCTTTAAAAGTTCTATTCAATCTACTGCACAGAATTTACCGCAAGCTGCCCTATTCTCACATAATGAAATTTCAGACAAAAATCAATCTATAGTAGAACGAATGAAATCAAAGTTTCTAGAGAAAGATTCAACTGATGATTCTGTGAGGGATCACAGCCATTGTAAATCAGTTCAAGTGGTTAAAAAGGCGTCTGACAATTCTCAGACTTCAAATGTGACCTCAGCCACACTTCTTGCCCGTCCGTTTGTTTCACATCAGTCTTCAGGAAGCCTTGTTTCTGGATATCAAAAACATGCATCAAACTTAAGCCAAAGGGCAGTCTTATCAACTTTAGCTTTTGCAGCGGAGCATGAATCAGGTATTAAGATGAAATGTAACGCGCTCATGCGGCTTATGACGACAAACTTGCCAACGTGCCATATCCGCAACTTTCTTGCTTCTGGATGTGACTTGAATTTTGAAGTGGCTAATTGA 2544 0.4057 MDIEFSMAFPPYRPSHFRSKTYSTLVRILSHVSPSAVPTQSLNIPDNGKVGMGQENQELEPVRSDVMDPKGSIPLKEMHDVHEIGESVGDRSKDFRTNEIVLDDEDSLMGIDEPSSQTNGFHLEQIMDELELVVKGTEDPVCNDGLIPLNCEKQNSGSEVDLMDYRVENVEFLHCGTNTSGIVSEVRTDLPVELNQLDSEVFHVVESTKGKASDSAISTTCINHDSQQKETELVKPVCPVTRSLPTIQESEFEKGEQYGHQVDEVAHSSIDHDKINEALNMTEDGGLLDSTILEDKNKTQNNEKPEKLICATDATNSSDLLVEGDLEEGEISGDFAMDGDTFDVSSAVATISEQMKVDEIQKPGNSFGNKAPPFNAVPTYLTPKQVLHKGFMEETTIKDHGNSFAVQEVIDVGRKRKYVPDSEEEEDKKKEMVDASKSKRGPGSKEKKNKKKKNYRKNRAEKNREQGVKRLKLIPVQKPKTISYCRHYIKGRCNEGDKCKFSHDIVPETKSKACVHFARHSCMKGDDCPFDHQLSKYPCSSMVSNGSCTRGDACLFSHQVPINQCIPTPTNACKPESKTPLPSGNTNFSTPLNNHGSSSVQQNHSTNSKGTDTPQRKPTSAPKGIRFINVANLSSSTPKQDTTTPNKGSLVHNGTCADKGQNTAEVTKKFSAVTPKGINFLSFGKGSVCSFKSSIQSTAQNLPQAALFSHNEISDKNQSIVERMKSKFLEKDSTDDSVRDHSHCKSVQVVKKASDNSQTSNVTSATLLARPFVSHQSSGSLVSGYQKHASNLSQRAVLSTLAFAAEHESGIKMKCNALMRLMTTNLPTCHIRNFLASGCDLNFEVAN 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05537 847 ProSiteProfiles Zinc finger C3H1-type profile. 508 535 IPR000571 GO:0046872
Vivi3g05537 847 Pfam CCCH-type zinc finger 485 504 IPR041367 -
Vivi3g05537 847 Gene3D - 442 509 - -
Vivi3g05537 847 MobiDBLite consensus disorder prediction 629 656 - -
Vivi3g05537 847 MobiDBLite consensus disorder prediction 417 442 - -
Vivi3g05537 847 MobiDBLite consensus disorder prediction 574 656 - -
Vivi3g05537 847 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 292 815 IPR045124 GO:0003723|GO:0045892
Vivi3g05537 847 ProSiteProfiles Zinc finger C3H1-type profile. 479 506 IPR000571 GO:0046872
Vivi3g05537 847 MobiDBLite consensus disorder prediction 417 466 - -
Vivi3g05537 847 Coils Coil 445 465 - -
Vivi3g05537 847 SMART c3hfinal6 480 505 IPR000571 GO:0046872
Vivi3g05537 847 SMART c3hfinal6 508 534 IPR000571 GO:0046872
Vivi3g05537 847 SMART c3hfinal6 536 560 IPR000571 GO:0046872
Vivi3g05537 847 MobiDBLite consensus disorder prediction 443 458 - -
Vivi3g05537 847 SUPERFAMILY CCCH zinc finger 479 504 IPR036855 GO:0046872
Vivi3g05537 847 ProSiteProfiles Zinc finger C3H1-type profile. 538 561 IPR000571 GO:0046872
Vivi3g05537 847 Gene3D - 510 572 - -
Vivi3g05537 847 MobiDBLite consensus disorder prediction 574 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05537 Vivi-Chr3 117034669 117040867 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g05537 zf-CCCH_4 1.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05537 - - vvo:131662386 1610.12