Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05536 ATGGATATTGAGTTCTCAATGGCGTTTCCTCCTTATCGCCCATCTCACTTCCGTAGCAAAACTTATAGCACCCTTGTCCGTATTCTCTCCCACGTCTCTCCTTCCGCCGTTCCAACTCAATCCCTCAATATTCCTGATAATGGCAAGGTTGGAATGGGGCAAGAAAACCAGGAACTGGAACCGGTTCGTTCTGATGTTATGGATCCCAAGGGTTCTATACCCTTGAAGGAAATGCATGATGTTCATGAGATCGGTGAGAGCGTTGGAGACAGGAGCAAGGATTTTAGAACCAATGAAATTGTCCTTGACGATGAAGACTCTTTGATGGGGATAGACGAACCATCCTCACAAACAAATGGTTTTCATTTGGAACAAATAATGGACGAATTGGAGCTTGTTGTGAAAGGGACTGAAGATCCTGTTTGCAATGATGGTTTAATCCCTTTGAACTGCGAGAAACAGAACAGTGGTAGTGAAGTTGATTTGATGGATTACCGAGTAGAGAATGTTGAGTTTCTGCATTGTGGTACAAACACGTCTGGAATTGTAAGTGAGGTACGAACAGATTTACCTGTGGAGCTTAATCAACTTGACTCAGAAGTCTTTCATGTGGTTGAGTCAACAAAGGGAAAAGCTTCTGATTCTGCAATCAGTACAACATGTATAAATCATGATAGTCAACAAAAGGAAACAGAATTGGTGAAACCGGTTTGTCCTGTAACGAGATCGCTTCCTACAATTCAAGAGAGTGAATTTGAGAAGGGAGAACAGTATGGTCATCAGGTTGATGAAGTAGCTCATAGTTCTATAGATCATGATAAGATTAATGAAGCATTGAATATGACAGAGGATGGTGGATTACTGGATTCAACAATTTTGGAAGATAAAAACAAAACACAAAATAATGAGAAACCAGAAAAGTTAATTTGTGCGACAGATGCTACAAATTCTTCCGATCTTCTGGTTGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGAGATTTTGCAATGGATGGAGACACATTTGACGTGTCTTCTGCTGTTGCTACAATATCAGAACAGATGAAAGTGGATGAGATTCAGAAACCAGGGAATTCATTTGGAAACAAGGCACCTCCCTTCAATGCCGTACCAACATATTTAACCCCAAAGCAAGTCTTGCACAAAGGATTCATGGAAGAAACCACTATCAAAGATCATGGGAACTCGTTTGCTGTACAGGAGGTAATTGATGTCGGTAGAAAGCGAAAATATGTTCCTGATTCAGAGGAGGAGGAAGATAAAAAGAAGGAGATGGTTGATGCCAGTAAAAGTAAACGCGGTCCTGGTTCTAAAGAGAAGAAAAATAAAAAGAAGAACTATCGAAAGAACAGAGCAGAAAAGAACAGAGAACAAGGTGTTAAAAGGTTGAAGCTGATTCCTGTACAGAAACCAAAAACCATCTCATATTGTCGCCATTATATCAAAGGAAGGTGCAATGAGGGTGACAAATGCAAATTCTCTCATGATATTGTTCCTGAAACAAAGTCCAAGGCATGTGTTCACTTTGCTCGTCACTCTTGTATGAAAGGGGATGATTGCCCATTTGATCACCAACTCTCTAAGTATCCTTGTTCTAGTATGGTTTCTAATGGCTCTTGTACTAGAGGTGATGCTTGTTTGTTTTCACACCAGGTACCGATCAACCAATGTATACCTACGCCTACAAATGCTTGCAAACCAGAGTCAAAGACTCCTCTTCCATCGGGAAATACAAATTTCAGTACGCCACTGAATAATCATGGCTCTAGTTCTGTCCAACAAAACCACTCGACCAATTCTAAGGGAACAGACACTCCGCAGAGAAAGCCTACCTCCGCACCCAAAGGAATTAGATTCATAAATGTTGCTAACTTATCATCTAGTACGCCAAAACAAGACACGACAACACCAAACAAGGGAAGTCTTGTCCACAATGGGACATGTGCAGATAAAGGTCAAAATACTGCAGAAGTTACTAAGAAATTTTCAGCTGTCACGCCCAAGGGAATTAACTTTCTTTCATTCGGAAAAGGTTCTGTTTGCAGCTTTAAAAGTTCTATTCAATCTACTGCACAGAATTTACCGCAAGCTGCCCTATTCTCACATAATGAAATTTCAGACAAAAATCAATCTATAGTAGAACGAATGAAATCAAAGTTTCTAGAGAAAGATTCAACTGATGATTCTGTGAGGGATCACAGCCATTGTAAATCAGTTCAAGTGGTTAAAAAGGCGTCTGACAATTCTCAGACTTCAAATGTGACCTCAGCCACACTTCTTGCCCGTCCGTTTGTTTCACATCAGTCTTCAGGAAGCCTTGTTTCTGGATATCAAAAACATGCATCAAACTTAAGCCAAAGGGCAGTCTTATCAACTTTAGCTTTTGCAGCGGAGCATGAATCAGGTATTAAGATGAAATGCCCCACTGTTGATTCACCTGTATGA 2466 0.4047 MDIEFSMAFPPYRPSHFRSKTYSTLVRILSHVSPSAVPTQSLNIPDNGKVGMGQENQELEPVRSDVMDPKGSIPLKEMHDVHEIGESVGDRSKDFRTNEIVLDDEDSLMGIDEPSSQTNGFHLEQIMDELELVVKGTEDPVCNDGLIPLNCEKQNSGSEVDLMDYRVENVEFLHCGTNTSGIVSEVRTDLPVELNQLDSEVFHVVESTKGKASDSAISTTCINHDSQQKETELVKPVCPVTRSLPTIQESEFEKGEQYGHQVDEVAHSSIDHDKINEALNMTEDGGLLDSTILEDKNKTQNNEKPEKLICATDATNSSDLLVEGDLEEGEISGDFAMDGDTFDVSSAVATISEQMKVDEIQKPGNSFGNKAPPFNAVPTYLTPKQVLHKGFMEETTIKDHGNSFAVQEVIDVGRKRKYVPDSEEEEDKKKEMVDASKSKRGPGSKEKKNKKKNYRKNRAEKNREQGVKRLKLIPVQKPKTISYCRHYIKGRCNEGDKCKFSHDIVPETKSKACVHFARHSCMKGDDCPFDHQLSKYPCSSMVSNGSCTRGDACLFSHQVPINQCIPTPTNACKPESKTPLPSGNTNFSTPLNNHGSSSVQQNHSTNSKGTDTPQRKPTSAPKGIRFINVANLSSSTPKQDTTTPNKGSLVHNGTCADKGQNTAEVTKKFSAVTPKGINFLSFGKGSVCSFKSSIQSTAQNLPQAALFSHNEISDKNQSIVERMKSKFLEKDSTDDSVRDHSHCKSVQVVKKASDNSQTSNVTSATLLARPFVSHQSSGSLVSGYQKHASNLSQRAVLSTLAFAAEHESGIKMKCPTVDSPV 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05536 821 ProSiteProfiles Zinc finger C3H1-type profile. 478 505 IPR000571 GO:0046872
Vivi3g05536 821 Gene3D - 509 571 - -
Vivi3g05536 821 Pfam CCCH-type zinc finger 484 503 IPR041367 -
Vivi3g05536 821 MobiDBLite consensus disorder prediction 573 617 - -
Vivi3g05536 821 MobiDBLite consensus disorder prediction 417 442 - -
Vivi3g05536 821 MobiDBLite consensus disorder prediction 443 457 - -
Vivi3g05536 821 SMART c3hfinal6 535 559 IPR000571 GO:0046872
Vivi3g05536 821 SMART c3hfinal6 507 533 IPR000571 GO:0046872
Vivi3g05536 821 SMART c3hfinal6 479 504 IPR000571 GO:0046872
Vivi3g05536 821 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 292 815 IPR045124 GO:0003723|GO:0045892
Vivi3g05536 821 MobiDBLite consensus disorder prediction 628 655 - -
Vivi3g05536 821 MobiDBLite consensus disorder prediction 417 466 - -
Vivi3g05536 821 Gene3D - 444 508 - -
Vivi3g05536 821 MobiDBLite consensus disorder prediction 573 655 - -
Vivi3g05536 821 Coils Coil 444 464 - -
Vivi3g05536 821 SUPERFAMILY CCCH zinc finger 478 503 IPR036855 GO:0046872
Vivi3g05536 821 ProSiteProfiles Zinc finger C3H1-type profile. 507 534 IPR000571 GO:0046872
Vivi3g05536 821 ProSiteProfiles Zinc finger C3H1-type profile. 537 560 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05536 Vivi-Chr3 117034667 117040867 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi3g05536 zf-CCCH_4 1.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05536 - - vvo:131662386 1620.14