Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05494 ATGGAAATGGAAGACCATAACCATAACCATCATCATCATCATCAACACTATGGTACTACTACTAGTAATACTATAACTGATCTCACACAACTCATTACCATTGGACAAAGATCAACAACCTCCCACTTCCCCACGGCGGAGCTCTTCCCTTCCGCCAGCAACCACCCGAATCTGGCTGTAACGGCGGCACAACAACAATATGAGATGATGATGTTTGGTCGTCAAGTAGCCGATATAATGCCTCGGAGTCTTCATGATTTTGTATCAACAGATTCTGCTGCTGTTGCTGCTGCTGCTACTACCACTACTACAAGTGCTTCAACACCTTCTCTTAGTGGTAATCTTGAGGCGGAAACTACCGGTTGCATTGGAGCAGGTGGAAGCATCGTCGATGCTTCCACCGGTAGATGGCCTAGACAAGAGACTCTTACTCTTCTTGAAATCAGATCTCGTCTTGATCCTCAATTCAAAGAAGCTACTCAAAAGGGTCCTCTTTGGGATCAACTTTCTAGGATGATGTGTGAAGAGCATGGATATCAAAGGAGTGGAAAAAAATGCAGGGAGAAGTTTGAAAATCTATACAAATACTACAAGAAAACAAAAGAAGGAAAAGCTGGAAGACAAGATGGAAAACATTACAGGTTCTTTCGTCAACTCGAAGCCTTATATGGCGAAAACAACAACCCTTCTTCATCTTCTCTCCCACATAACAATTTTGGAACCAACAACAAATATTGTGATAGTCTCAGCCTCACAAACTCCACCGAATTCGACACGTCTTCGTCTGATAATGACAACGATCATAGCATCGAGGGCTCGATGGAGAAGAGAAAAAAGAAGATGAGTGGAAAAAGCTTTTGGAAGGTAAAGATTAAAGACTTCATCGATTCGCAGGTGAAGAAGCTGGTGGAGAAGCAAGAGGAATGGTTGGAGAAGCTGACGAAAACACTGGAACAAAAGGAAAAGGAGAGAGTGTTGAGAGAAGAAGAATGGAGGGAACAAGAGAAAGAGAGGTTGGAAAAAGAGCACAATTTTTGGGCTAAAGAAAGAGCATGGATTGAAGCTAGGGATGCTGCTTTAATGGAAGCTTTGCAGAAACTAAAAGGAAACGATGAAACAATAACAAAAACTCAATCTTCTTCTCATCATGATGGAAACAAGAAGAGAAAGGAAAACACAAGAGGTTCTTTCTACTTTGATAGTAACGTTAACAACAATGTTGAAAGGTCTTGTTTATATAACAACAATGGAGTTGGAGTAGGAGTAGGAGTAGGAGTTTCTTATTGTGATGATCAAAGGGAAGTAGTACAAACAACCGACGGTTCAAATTCTAACAACGTTGTTGTTGCAGCTGAAAATTGTTTTCCATTTTTGATGGGTGAGGGTGGAAATTTGTGGGATAATTACAGCATGAAGGTTAATAAACCTAATCAAAACCAGTGA 1443 0.4089 MEMEDHNHNHHHHHQHYGTTTSNTITDLTQLITIGQRSTTSHFPTAELFPSASNHPNLAVTAAQQQYEMMMFGRQVADIMPRSLHDFVSTDSAAVAAAATTTTTSASTPSLSGNLEAETTGCIGAGGSIVDASTGRWPRQETLTLLEIRSRLDPQFKEATQKGPLWDQLSRMMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENNNPSSSSLPHNNFGTNNKYCDSLSLTNSTEFDTSSSDNDNDHSIEGSMEKRKKKMSGKSFWKVKIKDFIDSQVKKLVEKQEEWLEKLTKTLEQKEKERVLREEEWREQEKERLEKEHNFWAKERAWIEARDAALMEALQKLKGNDETITKTQSSSHHDGNKKRKENTRGSFYFDSNVNNNVERSCLYNNNGVGVGVGVGVSYCDDQREVVQTTDGSNSNNVVVAAENCFPFLMGEGGNLWDNYSMKVNKPNQNQ 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05494 480 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g05494 480 PANTHER FI21293P1 99 370 - -
Vivi3g05494 480 Coils Coil 303 342 - -
Vivi3g05494 480 CDD GT1 136 201 - -
Vivi3g05494 480 ProSiteProfiles Myb-like domain profile. 135 194 IPR001005 -
Vivi3g05494 480 MobiDBLite consensus disorder prediction 371 397 - -
Vivi3g05494 480 MobiDBLite consensus disorder prediction 255 277 - -
Vivi3g05494 480 MobiDBLite consensus disorder prediction 261 277 - -
Vivi3g05494 480 Pfam Myb/SANT-like DNA-binding domain 136 222 IPR044822 -
Vivi3g05494 480 Gene3D - 137 199 - -
Vivi3g05494 480 FunFam trihelix transcription factor PTL-like 137 199 - -
Vivi3g05494 480 MobiDBLite consensus disorder prediction 377 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05494 Vivi-Chr3 114606449 114608934 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05494 386 475 Trihelix Transcription Factor Family AT5G03680 34.021 9.17e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi3g05494 Myb_DNA-bind_4 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05494 - - psat:127125684 704.516