Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05493 ATGGAAATGGAAGACCATAACCATAACCATCATCATCATCATCAACACTATGGTACTACTACTAGTAATACTATAACTGATCTCACACAACTCATTACCATTGGACAAAGATCAACAACCTCCCACTTCCCCACGGCGGAGCTCTTCCCTTCCGCCAGCAACCACCCGAATCTGGCTGTAACGGCGGCACAACAACAATATGAGATGATGATGTTTGGTCGTCAAGTAGCCGATATAATGCCTCGGAGTCTTCATGATTTTGTATCAACAGATTCTGCTGCTGTTGCTGCTGCTGCTACTACCACTACTACAAGTGCTTCAACACCTTCTCTTAGTGGTAATCTTGAGGCGGAAACTACCGGTTGCATTGGAGCAGGTGGAAGCATCGTCGATGCTTCCACCGGTAGATGGCCTAGACAAGAGACTCTTACTCTTCTTGAAATCAGATCTCGTCTTGATCCTCAATTCAAAGAAGCTACTCAAAAGGGTCCTCTTTGGGATCAACTTTCTAGGATGATGTGTGAAGAGCATGGATATCAAAGGAGTGGAAAAAAATGCAGGGAGAAGTTTGAAAATCTATACAAATACTACAAGAAAACAAAAGAAGGAAAAGCTGGAAGACAAGATGGAAAACATTACAGGTTCTTTCGTCAACTCGAAGCCTTATATGGCGAAAACAACAACCCTTCTTCATCTTCTCTCCCACATAACAATTTTGGAACCAACAACAAATATTGTGATAGTCTCAGCCTCACAAACTCCACCGAATTCGACACGTCTTCGTCTGATAATGACAACGATCATAGCATCGAGGGCTCGATGGAGAAGAGAAAAAAGAAGATGAGTGGAAAAAGCTTTTGGAAGGTAAAGATTAAAGACTTCATCGATTCGCAGGTGAAGAAGCTGGTGGAGAAGCAAGAGGAATGGTTGGAGAAGCTGACGAAAACACTGGAACAAAAGGAAAAGGAGAGAGTGTTGAGAGAAGAAGAATGGAGGGAACAAGAGAAAGAGAGGTTGGAAAAAGAGCACAATTTTTGGGCTAAAGAAAGAGCATGGATTGAAGCTAGGGATGCTGCTTTAATGGAAGCTTTGCAGAAACTAAAAGGAAACGATGAAACAATAACAAAAACTCAATCTTCTTCTCATCATGATGGAAACAAGAAGAGAAAGGAAAACACAAGAGGTTCTTTCTACTTTGATAGTAACGTTAACAACAATGTTGAAAGGTCTTGTTTATATAACAACAATGGAGTTGGAGTAGGAGTAGGAGTAGGAGTTTCTTATTGTGATGATCAAAGGGAAGTAGTACAAACAACCGACGGTTCAAATTCTAACAACGTTGTTGTTGCAGCTGAAAATTGTTTTCCATTTTTGATGGGTGAGGGTGGAAATTTGTGGGATAATTACAGCATGAAGAAACATCAGAGGTTAAAACAAAAACAAAAAAACTGTGTTCAGATTTATTCGACCAAGTGTTGA 1479 0.4064 MEMEDHNHNHHHHHQHYGTTTSNTITDLTQLITIGQRSTTSHFPTAELFPSASNHPNLAVTAAQQQYEMMMFGRQVADIMPRSLHDFVSTDSAAVAAAATTTTTSASTPSLSGNLEAETTGCIGAGGSIVDASTGRWPRQETLTLLEIRSRLDPQFKEATQKGPLWDQLSRMMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENNNPSSSSLPHNNFGTNNKYCDSLSLTNSTEFDTSSSDNDNDHSIEGSMEKRKKKMSGKSFWKVKIKDFIDSQVKKLVEKQEEWLEKLTKTLEQKEKERVLREEEWREQEKERLEKEHNFWAKERAWIEARDAALMEALQKLKGNDETITKTQSSSHHDGNKKRKENTRGSFYFDSNVNNNVERSCLYNNNGVGVGVGVGVSYCDDQREVVQTTDGSNSNNVVVAAENCFPFLMGEGGNLWDNYSMKKHQRLKQKQKNCVQIYSTKC 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05493 492 MobiDBLite consensus disorder prediction 1 21 - -
Vivi3g05493 492 Gene3D - 137 199 - -
Vivi3g05493 492 Coils Coil 303 342 - -
Vivi3g05493 492 MobiDBLite consensus disorder prediction 377 393 - -
Vivi3g05493 492 FunFam trihelix transcription factor PTL-like 137 199 - -
Vivi3g05493 492 CDD GT1 136 201 - -
Vivi3g05493 492 ProSiteProfiles Myb-like domain profile. 135 194 IPR001005 -
Vivi3g05493 492 MobiDBLite consensus disorder prediction 255 277 - -
Vivi3g05493 492 MobiDBLite consensus disorder prediction 261 277 - -
Vivi3g05493 492 MobiDBLite consensus disorder prediction 371 393 - -
Vivi3g05493 492 PANTHER FI21293P1 99 384 - -
Vivi3g05493 492 Pfam Myb/SANT-like DNA-binding domain 136 222 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05493 Vivi-Chr3 114605891 114608936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05493 14 369 Trihelix Transcription Factor Family AT5G03680 48.168 6.70e-93 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi3g05493 Myb_DNA-bind_4 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05493 - - psat:127125684 693.73