LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g05487	ATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAAATAATTGAGAAGGAACTTGGCTTTGCTCCCACAGTCAATGGTTCTGCTTCTGCATCTGCTACAATCAGAAATGATTCCCAGTCTCAACGTCCACCTCATAGCATCCATGTAAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCTAACAAGACTAAAGGAGTATTTGATGATATGACTGGAGTTATTCCAAATGCAAATGAGGACTCAGAGAGGTCAAACAGAGCTTTGGGTGTTGCACGGCCGTGGCTGGATTCTAGGATTAACATGCGTAATAACCAGCATACTCATAGAGATGCATTTAATGATTCTGTTCCTGACAAGAGTATTGGCGGAGCCTATGGAGACGAGGAATATAATTCTAGTGGTTCAGATGTTGGAAGAACTGGAAGTAGGCTCATTGGTGGTGCTGCAGAGACCTTACCCGGGCAAAAAAATGGTTTCAGCCTCAAACATGGTTTTTCTAATCACGAAGCACCAAAGCCTATGAATTTGGATGCACATAACATAAGGAACAGTGCCATGTCAAGGAACTGGAAAAATTCAGAGGAAGAGGAGTTCGTGTGGGATGAGATGAACCCTGGTTTGCCTGAACATGTACGTAATGTCTCTAGCAACTTGAACTTAGACCCATGGAGTGCCGATGACGACAATTTGGAAAGTGAAGATCACCTCCAAGTGACACATCAAATTGGAACTAAAGTTGATAGAGGAATATCGACCGTTAAGAAACAACTACCATCATCTGGGGGCCATTCATCATTATCATGGGGATTGCAGAAGCAGCTTCCAAGTGCCAAATTGAATATGAAGTCAGGTCACTCAGAAATATTTGTTTCAGCTCCTAGTGGCTTACCCAGGAATTCAAATTCTTTGGCTGCAAGGATGAGAAATCAGTCTTCTATGCCGCATACAACTACAGGAACGGCCAAAATCATGGGACAGCAACAATTTGATTCTGAAGGTGCCGAATCCCCTTCTGAACAGTCTCCTTTGGAACAACAGTCTCCATCCGTGCCAGTAACAACACATCACACTCCTTCAGTGCGAAATTTGCCTGAGCAAGATTGTCCACAAACTCTGAAAACATCTCAACATTTGGGTGGTCAGCAAAGTCAATACATTAGAGATTCTGCACCTGCAACTCGTCCCAATGTTCAGGTTGGTAACTTGCGGAAATCACAAGCAAAGGATCCGCGGGTTTCATCATCTTCCGCAACTTCTCTCCAGGCAAAACCTCAACAACGACAGCTGGGCCCTTCACAGGCTGAAGTTACTCTTAAAGCTAAGCAGCCACTCAAGTCTAAAGTTTCTTTAGCCAAAGCCAAAGCCAAAGAAACTTCAGAAAAGTCAACCACAAAAAGTCTTCCAGCTACTACTGTGAAGAGTGGAGTCACCCCCAACAAATCAATTACCAAAAGTATGGATGCAAGTAATCGTCCATCTCTATCGGGGGTTAAGCCTACTCGGTCAACTGGTCCTTCCCCTACCACATTAATTTCTTCGGGGCCTTCCTCCGTGTCATTAGGTTCTCCAAATGATCATTCACAGACTTTGCCAAAACTACCTCAACGGAAGGTTGTAAAGAAGCCAAAAGTATCTACTCAACCATCCACTTCCTCTAATGACCGTGGTGCATCAGCTCCGAGCTCAAATACCGTCAATAAGATTAACTTGAATCCAATTTCAAACCTTTTAAGTTCTTTAGTTGCTAAAGGTTTGATATCCGCTGGAACGGAGTCAGCAGCTGTAGTGCCAAATGAAACGGGGATTCGATCGAAAGGCCAAACTGAAAGCATCACTACCAGTTCCTCATTGCCAGTTGTTTCAATTCTTGATTCTGCAACTTTCCCAGTAAAATCTTCCAAAGTTGAGGTAGATGGTGATGAGGTGGATGGTGACGAGGTAGATGGTGATGAGGTAGATGATGCTGCAAAAATCTCACTTCCCTTGTCTCAATCAACTAGCACAGAAATTATAAATCTCATTGGCTTTGATTTCAAACCTGATGTAATTCGAGAAATGCACCCACATGTTATCACAAAATTATTGGAAGAACTCCCACATCATTGCAGTAAATGTGGTATTAGGCTTAAACACCTAGAACAGTTTGATAGACACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAATGATCTGAATGGAGCATCAAGAAGATGGTACGCAAAGTCGAATGACTGGATCGCTGGCAAGGCTGGATATCTGTCAGAGTCTGAATTTACTGATTCTGTAGATGAACATGATGATGAAAACACATATGAGATGGTTTTAGCAGATGAAAACCAGTGCTTGTGTGTTTTGTGTGGTGAGCTATTTGAAGATGTATACTGTCAGGAAAGGGAGCAATGGATGTTCAAGGGAGCTGTTTACCTGAACAATTCCGATGACGTTAGTGAGGTGGAAAGTAGAAATGTGGGCCCCATCATTCATGCTAGATGCTTATCAGAGAACAAAATATCTGTTGTGACCAATACAGTAAGGCTCACAGTGAATTAA	2577	0.4276	MRHLFGTWRGVFPPQTLQIIEKELGFAPTVNGSASASATIRNDSQSQRPPHSIHVNPKYLERQRLQQSNKTKGVFDDMTGVIPNANEDSERSNRALGVARPWLDSRINMRNNQHTHRDAFNDSVPDKSIGGAYGDEEYNSSGSDVGRTGSRLIGGAAETLPGQKNGFSLKHGFSNHEAPKPMNLDAHNIRNSAMSRNWKNSEEEEFVWDEMNPGLPEHVRNVSSNLNLDPWSADDDNLESEDHLQVTHQIGTKVDRGISTVKKQLPSSGGHSSLSWGLQKQLPSAKLNMKSGHSEIFVSAPSGLPRNSNSLAARMRNQSSMPHTTTGTAKIMGQQQFDSEGAESPSEQSPLEQQSPSVPVTTHHTPSVRNLPEQDCPQTLKTSQHLGGQQSQYIRDSAPATRPNVQVGNLRKSQAKDPRVSSSSATSLQAKPQQRQLGPSQAEVTLKAKQPLKSKVSLAKAKAKETSEKSTTKSLPATTVKSGVTPNKSITKSMDASNRPSLSGVKPTRSTGPSPTTLISSGPSSVSLGSPNDHSQTLPKLPQRKVVKKPKVSTQPSTSSNDRGASAPSSNTVNKINLNPISNLLSSLVAKGLISAGTESAAVVPNETGIRSKGQTESITTSSSLPVVSILDSATFPVKSSKVEVDGDEVDGDEVDGDEVDDAAKISLPLSQSTSTEIINLIGFDFKPDVIREMHPHVITKLLEELPHHCSKCGIRLKHLEQFDRHLEWHATKEREQNDLNGASRRWYAKSNDWIAGKAGYLSESEFTDSVDEHDDENTYEMVLADENQCLCVLCGELFEDVYCQEREQWMFKGAVYLNNSDDVSEVESRNVGPIIHARCLSENKISVVTNTVRLTVN	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g05487	858	MobiDBLite	consensus disorder prediction	336	443	-	-
	Vivi3g05487	858	MobiDBLite	consensus disorder prediction	35	54	-	-
	Vivi3g05487	858	MobiDBLite	consensus disorder prediction	550	576	-	-
	Vivi3g05487	858	MobiDBLite	consensus disorder prediction	470	539	-	-
	Vivi3g05487	858	MobiDBLite	consensus disorder prediction	69	92	-	-
	Vivi3g05487	858	PANTHER	PRE-MRNA CLEAVAGE COMPLEX II	1	844	IPR045154	GO:0000993\|GO:0003729\|GO:0006369\|GO:0006378\|GO:0006379
	Vivi3g05487	858	MobiDBLite	consensus disorder prediction	116	150	-	-
	Vivi3g05487	858	ProSitePatterns	Zinc finger C2H2 type domain signature.	710	730	IPR013087	-
	Vivi3g05487	858	MobiDBLite	consensus disorder prediction	35	52	-	-
	Vivi3g05487	858	MobiDBLite	consensus disorder prediction	336	576	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g05487	Vivi-Chr3	114485145	114489396	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g05487	682	843	C2H2 Transcription Factor Family	AT4G04885	35.465	6.23e-32	131