Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05486 ATGGAAGGAACTCGTAGATTGTTGGATAGATCCAGAGAACCGGGTCCCAAGAAGCCCCGATTGATGGAAGGTTCAAACCCTAATACTCGACCCTTTCCTCAACGACAAGCTGCCTCTGGGGCTGCTGCGTTGGCTAGGTTTCGAATTAATGACAGAGAAATTGATACTGGTGATGGTGATCATGGGGACGGTGGTTACCACCCGCAGCCACCGCCGCATCAAGAGCTTGTGACTCAGTATAGGGCTGCTCTGGCCGAGCTTACTTTCAATTCGAAACCGATAATTACCAACTTGACTATCATTGCTGGAGAGAATCTTTCGGCTGCGAAATCAATTGCTGGAGCTGTTTGTGCTAATATTCTAGAGGTTTCAAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGATAGTATTGTCAAGAATATTGGGCGAGATTACATAAAATACTTTGCTGTTAGACTACCTGAGGTATTCTGCAATACATACAAACATGTTGATCCTCCTGTGCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAAATAATTGAGAAGGAACTTGGCTTTGCTCCCACAGTCAATGGTTCTGCTTCTGCATCTGCTACAATCAGAAATGATTCCCAGTCTCAACGTCCACCTCATAGCATCCATGTAAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCTAACAAGACTAAAGGAGTATTTGATGATATGACTGGAGTTATTCCAAATGCAAATGAGGACTCAGAGAGGTCAAACAGAGCTTTGGGTGTTGCACGGCCGTGGCTGGATTCTAGGATTAACATGCGTAATAACCAGCATACTCATAGAGATGCATTTAATGATTCTGTTCCTGACAAGAGTATTGGCGGAGCCTATGGAGACGAGGAATATAATTCTAGTGGTTCAGATGTTGGAAGAACTGGAAGTAGGCTCATTGGTGGTGCTGCAGAGACCTTACCCGGGCAAAAAAATGGTTTCAGCCTCAAACATGGTTTTTCTAATCACGAAGCACCAAAGCCTATGAATTTGGATGCACATAACATAAGGAACAGTGCCATGTCAAGGAACTGGAAAAATTCAGAGGAAGAGGAGTTCGTGTGGGATGAGATGAACCCTGGTTTGCCTGAACATGTACGTAATGTCTCTAGCAACTTGAACTTAGACCCATGGAGTGCCGATGACGACAATTTGGAAAGTGAAGATCACCTCCAAGTGACACATCAAATTGGAACTAAAGTTGATAGAGGAATATCGACCGTTAAGAAACAACTACCATCATCTGGGGGCCATTCATCATTATCATGGGGATTGCAGAAGCAGCTTCCAAGTGCCAAATTGAATATGAAGTCAGGTCACTCAGAAATATTTGTTTCAGCTCCTAGTGGCTTACCCAGGAATTCAAATTCTTTGGCTGCAAGGATGAGAAATCAGTCTTCTATGCCGCATACAACTACAGGAACGGCCAAAATCATGGGACAGCAACAATTTGATTCTGAAGGTGCCGAATCCCCTTCTGAACAGTCTCCTTTGGAACAACAGTCTCCATCCGTGCCAGTAACAACACATCACACTCCTTCAGTGCGAAATTTGCCTGAGCAAGATTGTCCACAAACTCTGAAAACATCTCAACATTTGGGTGGTCAGCAAAGTCAATACATTAGAGATTCTGCACCTGCAACTCGTCCCAATGTTCAGGTTGGTAACTTGCGGAAATCACAAGCAAAGGATCCGCGGGTTTCATCATCTTCCGCAACTTCTCTCCAGGCAAAACCTCAACAACGACAGCTGGGCCCTTCACAGGCTGAAGTTACTCTTAAAGCTAAGCAGCCACTCAAGTCTAAAGTTTCTTTAGCCAAAGCCAAAGCCAAAGAAACTTCAGAAAAGTCAACCACAAAAAGTCTTCCAGCTACTACTGTGAAGAGTGGAGTCACCCCCAACAAATCAATTACCAAAAGTATGGATGCAAGTAATCGTCCATCTCTATCGGGGGTTAAGCCTACTCGGTCAACTGGTCCTTCCCCTACCACATTAATTTCTTCGGGGCCTTCCTCCGTGTCATTAGGTTCTCCAAATGATCATTCACAGACTTTGCCAAAACTACCTCAACGGAAGGTTGTAAAGAAGCCAAAAGTATCTACTCAACCATCCACTTCCTCTAATGACCGTGGTGCATCAGCTCCGAGCTCAAATACCGTCAATAAGATTAACTTGAATCCAATTTCAAACCTTTTAAGTTCTTTAGTTGCTAAAGGTTTGATATCCGCTGGAACGGAGTCAGCAGCTGTAGTGCCAAATGAAACGGGGATTCGATCGAAAGGCCAAACTGAAAGCATCACTACCAGTTCCTCATTGCCAGTTGTTTCAATTCTTGATTCTGCAACTTTCCCAGTAAAATCTTCCAAAGTTGAGGTAGATGGTGATGAGGTGGATGGTGACGAGGTAGATGGTGATGAGGTAGATGATGCTGCAAAAATCTCACTTCCCTTGTCTCAATCAACTAGCACAGAAATTATAAATCTCATTGGCTTTGATTTCAAACCTGATGTAATTCGAGAAATGCACCCACATGTTATCACAAAATTATTGGAAGAACTCCCACATCATTGCAGTAAATGTGGTATTAGGCTTAAACACCTAGAACAGTTTGATAGACACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAATGATCTGAATGGAGCATCAAGAAGATGGTACGCAAAGTCGAATGACTGGATCGCTGGCAAGGCTGGATATCTGTCAGAGTCTGAATTTACTGATTCTGTAGATGAACATGATGATGAAAACACATATGAGATGGTTTTAGCAGATGAAAACCAGTGCTTGTGTGTTTTGTGTGGTGAGCTATTTGAAGATGTATACTGTCAGGAAAGGGAGCAATGGATGTTCAAGGGAGCTGTTTACCTGAACAATTCCGATGACGTTAGTGAGGTGGAAAGTAGAAATGTGGGCCCCATCATTCATGCTAGATGCTTATCAGAGAACAAAATATCTGTTGTGACCAATACAGAGCTTGATTAA 3084 0.4313 MEGTRRLLDRSREPGPKKPRLMEGSNPNTRPFPQRQAASGAAALARFRINDREIDTGDGDHGDGGYHPQPPPHQELVTQYRAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCANILEVSSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCNTYKHVDPPVHSSMRHLFGTWRGVFPPQTLQIIEKELGFAPTVNGSASASATIRNDSQSQRPPHSIHVNPKYLERQRLQQSNKTKGVFDDMTGVIPNANEDSERSNRALGVARPWLDSRINMRNNQHTHRDAFNDSVPDKSIGGAYGDEEYNSSGSDVGRTGSRLIGGAAETLPGQKNGFSLKHGFSNHEAPKPMNLDAHNIRNSAMSRNWKNSEEEEFVWDEMNPGLPEHVRNVSSNLNLDPWSADDDNLESEDHLQVTHQIGTKVDRGISTVKKQLPSSGGHSSLSWGLQKQLPSAKLNMKSGHSEIFVSAPSGLPRNSNSLAARMRNQSSMPHTTTGTAKIMGQQQFDSEGAESPSEQSPLEQQSPSVPVTTHHTPSVRNLPEQDCPQTLKTSQHLGGQQSQYIRDSAPATRPNVQVGNLRKSQAKDPRVSSSSATSLQAKPQQRQLGPSQAEVTLKAKQPLKSKVSLAKAKAKETSEKSTTKSLPATTVKSGVTPNKSITKSMDASNRPSLSGVKPTRSTGPSPTTLISSGPSSVSLGSPNDHSQTLPKLPQRKVVKKPKVSTQPSTSSNDRGASAPSSNTVNKINLNPISNLLSSLVAKGLISAGTESAAVVPNETGIRSKGQTESITTSSSLPVVSILDSATFPVKSSKVEVDGDEVDGDEVDGDEVDDAAKISLPLSQSTSTEIINLIGFDFKPDVIREMHPHVITKLLEELPHHCSKCGIRLKHLEQFDRHLEWHATKEREQNDLNGASRRWYAKSNDWIAGKAGYLSESEFTDSVDEHDDENTYEMVLADENQCLCVLCGELFEDVYCQEREQWMFKGAVYLNNSDDVSEVESRNVGPIIHARCLSENKISVVTNTELD 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05486 1027 MobiDBLite consensus disorder prediction 642 711 - -
Vivi3g05486 1027 MobiDBLite consensus disorder prediction 241 264 - -
Vivi3g05486 1027 MobiDBLite consensus disorder prediction 53 72 - -
Vivi3g05486 1027 SUPERFAMILY ENTH/VHS domain 72 202 IPR008942 -
Vivi3g05486 1027 CDD CID_Pcf11 77 189 IPR047415 -
Vivi3g05486 1027 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 54 1016 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vivi3g05486 1027 MobiDBLite consensus disorder prediction 508 748 - -
Vivi3g05486 1027 MobiDBLite consensus disorder prediction 207 224 - -
Vivi3g05486 1027 ProSitePatterns Zinc finger C2H2 type domain signature. 882 902 IPR013087 -
Vivi3g05486 1027 Pfam CID domain 82 190 IPR006569 -
Vivi3g05486 1027 SMART 558neu5 75 197 IPR006569 -
Vivi3g05486 1027 MobiDBLite consensus disorder prediction 1 19 - -
Vivi3g05486 1027 MobiDBLite consensus disorder prediction 722 748 - -
Vivi3g05486 1027 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Vivi3g05486 1027 Gene3D - 69 197 IPR008942 -
Vivi3g05486 1027 MobiDBLite consensus disorder prediction 508 615 - -
Vivi3g05486 1027 MobiDBLite consensus disorder prediction 288 322 - -
Vivi3g05486 1027 MobiDBLite consensus disorder prediction 207 226 - -
Vivi3g05486 1027 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Vivi3g05486 1027 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05486 Vivi-Chr3 114483485 114490200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05486 32 387 C2H2 Transcription Factor Family AT4G04885 37.435 5.62e-55 204