Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05473 ATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCAATGAAACTTGCTGATGATATCAGTGGCATGATTTCTGAACATAATTCATTTCCTTCATCTGGACCAGAAACACAGCGTCATGCATCTGCTATAAGAAGGAAGATAACAATATTGGGGACCAGACTGGATAGCTTGCAATCCCTTTTGTCAAGAGTCCCTGTAAAGTCTGAGAAGGAGATGAATCGTCGCAAGGACAACCTTGCAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACGTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAATAAAACCAGATGCAATGAGCAGAACTGTTGGCTTGGATAACAATAAACTTGTTGGTCTGCAACGGCAAGTTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAAACTGTATTAAGTACGAAACATATTGCGTTGGCAGTGAATGAAGAGCTGACTCTACACACTAGACTCATTGATGACTTGGACGAACATGTAGATGTCACGGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGCACCAAGGGTGGTTGCTCATGCTTGTGCATGCTATTATCTGTGATTGGTATAGTGGTCTTGGTTGTTGTCATATATCTTCTGATCAAATATGTGCCCTAA 693 0.4127 MASSSDSWMKEYNEAMKLADDISGMISEHNSFPSSGPETQRHASAIRRKITILGTRLDSLQSLLSRVPVKSEKEMNRRKDNLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRTVGLDNNKLVGLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRRVQKNLAILNKRTKGGCSCLCMLLSVIGIVVLVVVIYLLIKYVP 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05473 230 SUPERFAMILY SNARE fusion complex 125 194 - -
Vivi3g05473 230 SMART tSNARE_6 128 195 IPR000727 -
Vivi3g05473 230 Gene3D - 134 197 - -
Vivi3g05473 230 CDD SNARE_Qc 136 193 - -
Vivi3g05473 230 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Vivi3g05473 230 FunFam syntaxin-51 isoform X2 135 197 - -
Vivi3g05473 230 Pfam SNARE domain 170 221 IPR000727 -
Vivi3g05473 230 PANTHER SYNTAXIN 38 216 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05473 Vivi-Chr3 113980598 113986357 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05473 1 229 SNARE and Associated Proteins AT1G79590 72.532 6.00e-120 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05473 K08503 - gmx:100794038 373.629