Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05453 ATGGCATCATCGGATGACGAAATTGATACACAGCCATTGTCTGTGTCGAATTACCATTTTGAAGACGATAAAGACACGCCGATTTCTTTTTCTGTTTTGCCTATTCAATGGAGTGAGTCTGAGAGTCCGAAAGGGAAGAAAGAGAAGGTGTTTTTGCACGGTAATGCAGATAACGGTCTGAAGAAGATTTTTATGCAAGTTATAGCATGGAGGTTTGATCTTTCTAATGTGAAGCCTGAGATATCAGTGCTATCGAAGGATGGTAAATGGATTAAACTTCAAAAGCCAAGGAAGAGCTATGAGGATACGATAAGGACTATTTTGATCACGGTTTACTTCATGCATTTCGTGAAGAAGAATCTAGAAACATCAGCAAAATCTGTGTGGGATAGCTTGAGTAAGAATAAGGATTTTAGTTATTATGAAGTTAAACCTTCGCATAATGATTTGTTAAACCATATGGCTTTAATGAGTGAAGCTGCCTCAAAGGATGCTGTCTTAGCAAAGTCCAAGCTTTTGCTCACGGTTCTGGAAGATAAGGATACAATGAGGATTAAGAAGCTTTCCGATGAGGAAGTTAAAGAGCTAGCACGACCTGGATTTATAATTGATGATATTGACAATGATGAAATTGATGAGACTGTTGCAGATGAAGAATCAGATGAAGAAGATGCGTTATTTGATTCTGTTTGTTCGATTTGTGACAACGGCGGAAATATTTTGTGTTGTGATGGAAAGTGTATGAGGTCATTTCATGCTAATAAGAAGGATGGTGAAGATTCTGCTTGTGCCTCTCTTGGATTTAGCCAGAAGGAAGTTGAGGAGATCCAAAATTTCTATTGTAAGAATTGCGAATATAATAAACACCAATGCTTTGCATGTGGCCGACTAGGCTGTTCTGATAAATTTGCTGGTGCTGAGGTCTTCAAATGTGCTTCTGCAACCTGCGGTTTCTTTTATCATCCAGAATGTGTCACGAAGTTACTAAAGCTGGTGGTTAAGGATGATCCAGCAGAACTTTTAAGCAATATAACCAAGGGGGAGCCTTTCACCTGTCCTGCTCATTATTGCCGTATCTGTAAAGAAATGGAAAACAAGAACGAGCACGAGTTACACTTTGCTGTTTGTAGGCGTTGTCCCAGGTCATATCATCGCAAATGTTTGCCAAGAAAGATTGCTTTTGAAGACGAAGTGGATGAAGGCGTTATGGCCAGGGCTTGGGAAGATCTTTTGCCAAACAATCGCATTCTTATTTATTGCTTAAAGCATGAGATAGATGATGAACTTGGAACTCCTATAAGAGATCATATAAAATTCCCTGGTGTTAAAAAGAAAATAAAGCCTGCAACCAAAGAAGTTATATCAAACAAGAACAATGCTAAGTTAGATGATTTACTTGTTAAAAGAACAAGTGCTAAATCGTCTACATTGTCTGGAAAAATGTCCTCCGAGAAAGTTGATATCAAGAATTTTAGAAAAATATCGGGATCAAATATCCCTAGAAATAAAGCAAATGATGCGACAAGAAGGTGTTTGAGTGAAAATAAGAGGTCAACTTTAAATGAAACAGAAAGGTCTAACCACGAGGAAAATCAGCCCTCACTGGGTGTGCAACTTTATGATCTCTATCATAGGGGTTCCGAGCAAATTAGTTCTGACAACCATGTTGATATTGTTGCTGATAACACAGTGTCTGTTAAGCCTAAAAAGCTGAGCAGTGCACCACCCCAATTAGACGTAGATTCAGAGAGGAGATTGTTGGCTTTGTTTAAAGAAGCTTCATCATCAGTTACAATGGAGAATGTCATAAAGGAACATAACTTTACTTCTTCTACTCATGCTCACTCGCTAAAAAATATTGTGGAGAAGACTATTACAATGGGAAAGTTGGAAGGATCAGTCGAGGCTGTTCGAACGGCTTTAAGGATGCTGGATAAAGGACATAGCATTCGGGATGCAGAAGCTGTTTGTGGTCCTGATGTTATGAACCGGTTATTCAAGTGGAAGGACAAGTTGAAAGTATATCTTGCACCTGTTTTATATGGCAATCGCTACACTTCATTTGGCCGCCATTTTACACAAGTGGAAAAGCTGGAAGGGATTGTGGATAAACTTCATTGGTATGTTCAGAATGATGATATGATTGTGGACTTCTGCTGTGGTGCTAATGATTTTAGCATTCTCATGAAGAAAAGACTTGAAGATACTGGGAAGAGATGCTTCTTCAAAAACTTTGATTTACTTCCAACAAAGAATGATTTTAATTTTGAAATGAGAGATTGGATGACTGTCCGGCGAAAGGATTTGCCTTCAGGGTCACGGTTGATCATGGGTCTTAATCCTCCCTTTGGGCTTAAAGCAGCTTTAGCTAACAAGTTTATAGACAAGGCTTTAGAGTTTGAGCCGAAGCTCCTGATTCTTATAGTACCTCCAGAGACAGAGAGGCTGGATAAAAAACGGTCACCATATGATCTTGTCTGGGAGGATGACAGGTTTCTATCAGGCAAGTCATTTTATCTACCTGGATCAGTTGATACTAATGACAAACAATTGGAGCAATGGAATGTAAAGGCACCCCCTCTCTACCTTTGGAGCCGTCCAGACTGGACTGATAAGCATAAGCTCATAGCCCAGAAGAATGGTCACCTGTTCAGACAGCATGATGTTTCGAAAATGGAAAGCTTCGACAGGGAAAAATCATCTGCCAGTCATACTATGGATGATGACTATATTGATGATACCATGCTGGATCGTATGCTGGATCATGATTTCTTGAAGTCAACTAATGGTGAAGATTGCTCATTTATGGTTGGACAGGTGCAACAAGGTTTGTCTCATGGAAATTTTGATAGAGAGAGTCAAGATAGACATGAGTATTTGGGGACTAAGGCTGAGAGCACCACGTGGAAAAGGAAGCGATCAGATGAAAATGATGGAAGAGGACCAGCTGTGACCTTACCAGCTAAAAGGCAAGGTATAAATGAAATGTATGAGGGAGTACTGGACCATGGTACCTCCAGTCCACCTGATTTTGAGGGAAATCAGTCCGGATCAGACATGATACTTTCAGATAATGATGTTGGTGATAATGGTTATGAACCTCTGGAGCCCCACTCTTCCATTGGTGATGATGGCCAAAGATGGCCAAATGTTGCTGATTCCCTCCCTGATTATGGGCTGGCCGATTTACAGGAACACAGTAGCAGGCATATGGGAGACAATACAAGTAGCCTCGGATATAGACCTCATCTCAGGGAGGATGATAGTCACCTGAGGGAATTAGAGACAAGACAACAGATTATCCCTCCAGGACTTCAGAATCCCAATCCTATGAGTAGTAGTTATCTATCTGGTCACGGTCCTGCTTATAACCAAATGGGGTCTACTTATTCAGGACTTGGCTCAAGATCTGAATTGCCTTACATGATGAATACACCAGCTATGCCAATGAATACGCCAGCTATGCAACGATATGCACCTCGTCTCGATGAATTAAACCATGTTAGGACAAATTCTTTGGGGCCTGAGCATCCTACAGTTAATAGAAGTAACACTTCTGAACGTAGTACCCCTCAACCTGGATATGGAAATGTACTGCCTGGTTTTCCAGGTGGTCCTTCCCATTTGTATTCACGCCACTTTTAG 3645 0.4058 MASSDDEIDTQPLSVSNYHFEDDKDTPISFSVLPIQWSESESPKGKKEKVFLHGNADNGLKKIFMQVIAWRFDLSNVKPEISVLSKDGKWIKLQKPRKSYEDTIRTILITVYFMHFVKKNLETSAKSVWDSLSKNKDFSYYEVKPSHNDLLNHMALMSEAASKDAVLAKSKLLLTVLEDKDTMRIKKLSDEEVKELARPGFIIDDIDNDEIDETVADEESDEEDALFDSVCSICDNGGNILCCDGKCMRSFHANKKDGEDSACASLGFSQKEVEEIQNFYCKNCEYNKHQCFACGRLGCSDKFAGAEVFKCASATCGFFYHPECVTKLLKLVVKDDPAELLSNITKGEPFTCPAHYCRICKEMENKNEHELHFAVCRRCPRSYHRKCLPRKIAFEDEVDEGVMARAWEDLLPNNRILIYCLKHEIDDELGTPIRDHIKFPGVKKKIKPATKEVISNKNNAKLDDLLVKRTSAKSSTLSGKMSSEKVDIKNFRKISGSNIPRNKANDATRRCLSENKRSTLNETERSNHEENQPSLGVQLYDLYHRGSEQISSDNHVDIVADNTVSVKPKKLSSAPPQLDVDSERRLLALFKEASSSVTMENVIKEHNFTSSTHAHSLKNIVEKTITMGKLEGSVEAVRTALRMLDKGHSIRDAEAVCGPDVMNRLFKWKDKLKVYLAPVLYGNRYTSFGRHFTQVEKLEGIVDKLHWYVQNDDMIVDFCCGANDFSILMKKRLEDTGKRCFFKNFDLLPTKNDFNFEMRDWMTVRRKDLPSGSRLIMGLNPPFGLKAALANKFIDKALEFEPKLLILIVPPETERLDKKRSPYDLVWEDDRFLSGKSFYLPGSVDTNDKQLEQWNVKAPPLYLWSRPDWTDKHKLIAQKNGHLFRQHDVSKMESFDREKSSASHTMDDDYIDDTMLDRMLDHDFLKSTNGEDCSFMVGQVQQGLSHGNFDRESQDRHEYLGTKAESTTWKRKRSDENDGRGPAVTLPAKRQGINEMYEGVLDHGTSSPPDFEGNQSGSDMILSDNDVGDNGYEPLEPHSSIGDDGQRWPNVADSLPDYGLADLQEHSSRHMGDNTSSLGYRPHLREDDSHLRELETRQQIIPPGLQNPNPMSSSYLSGHGPAYNQMGSTYSGLGSRSELPYMMNTPAMPMNTPAMQRYAPRLDELNHVRTNSLGPEHPTVNRSNTSERSTPQPGYGNVLPGFPGGPSHLYSRHF 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05453 1214 MobiDBLite consensus disorder prediction 964 979 - -
Vivi3g05453 1214 MobiDBLite consensus disorder prediction 1 17 - -
Vivi3g05453 1214 MobiDBLite consensus disorder prediction 1172 1193 - -
Vivi3g05453 1214 MobiDBLite consensus disorder prediction 497 534 - -
Vivi3g05453 1214 MobiDBLite consensus disorder prediction 507 529 - -
Vivi3g05453 1214 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 133 IPR022702 -
Vivi3g05453 1214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 378 IPR013083 -
Vivi3g05453 1214 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 901 - -
Vivi3g05453 1214 SMART PHD_3 230 285 IPR001965 -
Vivi3g05453 1214 SMART PHD_3 290 356 IPR001965 -
Vivi3g05453 1214 SMART PHD_3 357 424 IPR001965 -
Vivi3g05453 1214 CDD PHD2_NSD 290 355 - -
Vivi3g05453 1214 MobiDBLite consensus disorder prediction 1169 1214 - -
Vivi3g05453 1214 MobiDBLite consensus disorder prediction 964 986 - -
Vivi3g05453 1214 MobiDBLite consensus disorder prediction 1 25 - -
Vivi3g05453 1214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 287 IPR013083 -
Vivi3g05453 1214 CDD PHD3_NSD 356 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05453 Vivi-Chr3 113071994 113086398 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05453 - - mtr:11437997 1943.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05453 3 113071994 113086398 Vivi7g02677 7 90651047 90658170 PCT