Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05428 ATGGCCATGATGATGATGAGCATGATGGTTGCAGTTAATTCTACATCTGATATGGAAAAAAATCTGGCTCATGATCATGCACAGGTTGTTCCTATAACACTCTTTGTCGCTGTTCTTTGCCTATGTTTGCTCATTGGTCACTTGCTTGAAGAGAGTCGATGGATTAATGAATCCATTGTCGCCATTTTTGTTGGATGCATTGCTGGATTGGTTATCTTGTTAATAACTAAGGGAAAAAGTTCTCGAATTCTTACATTTAATGAAGAAGTATTCTTCATATATCTACTTCCTCCTATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACAGTTCTTCCATAACTTTTTAACCATCATGCTCTTTGGAGTTGTCGGTGTTTTCATTTCAACGTCTATTATTACCGGTGGCAGCTGGTGGCTGTTTCCCAAGTTGGCCTTCCCTTACCTGACAGCGCGAGATTATCTCGCTTTAGGAGTAATTTTCTCCTCAACCGACACAGTATGTACGCTACAGGTTCTTAATCAAGAAGCTACTCCTTTACTATACAGCTTAGTCTTTGGGGAAGGAGTGGTAAACGATGCAACATCAGTTGTACTCTTCAATGCAGTCCAAAAGCTTGATGTTTCAAGACTTAACGGCAAGGCACTCCGTGTTGTTGGTGATTTCTTGTATCTATTCGCAGCAAGCACTGCGCTTGGAGTCATAGCTGGACTTGTCACAGCATATATCTTGAAAGCGTTAACCTTTGGAAAACATTCAAGTGTTCGTGAAATCTCAATGATGATGTTAATGGCATATCTATCCTACATGTTGGCAGAGCTACTTGAACTAAGTGGAATCCTCACTGTTTTCTTCTGTGGAATATCAATGTCACATTATGCATGGCATAATGTGACTGAAATTTCAAGAACCACAACCAGGCACGTGTTTGCAACAATGTCGTTTATTGCCGAAACCTTCATATTTCTTTACGTCGGTATGGATGCGCTTGACATTGAAAAGTGGAGGATGACCCATTTAAGATTTGGAAATTTGATGGGAATTTACAGCTGCTTAATCTTCTTAATATTGCTGGGGAGGGCTGCATTTGTTTTTCCCCTCTCAGCACTGGTCAATTATATGAATAGGCGCGTCGAAGATACACCTAGTATCACATTACAACACCAGATAATCATTTGGTGGGCTGGACTAATGAGGGGAGCAGTCTCCATCGCATTGGCCTTCAAACAGTTCACGTTTTCTGGGGTTACTTCAGATCCGGTTAAAGCAACCATGATTACCAACACTATTATTGTTGTCCTTTTCACTACACTCGTGTTTGGTTGCGTCACAAAACCACTTGTTAGACATCTTCTTCCCCACCACCATGCAAGAAGGGTAGACAAGAGACCGGATGAATCAGGGTCAGGGTCAGGGTCACCCGTCGGGGACTTGAATCTACCTTTGCTATCGTTTCACGAGTCAGCAGAAACCAACATTAGCCGCGCAAAGGAAAGCCTATCCATGCTAATAGAAAGTCCTGTGTACACCATACATTACTATTGGAGGAAGTTTGATGATGCCTACATGAGACCTATATTTGGAGGACCTTGCTCTAACCCTAACCCTAGCCCTAACCCTTCAGAGTGCTAG 1635 0.4196 MAMMMMSMMVAVNSTSDMEKNLAHDHAQVVPITLFVAVLCLCLLIGHLLEESRWINESIVAIFVGCIAGLVILLITKGKSSRILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVVGVFISTSIITGGSWWLFPKLAFPYLTARDYLALGVIFSSTDTVCTLQVLNQEATPLLYSLVFGEGVVNDATSVVLFNAVQKLDVSRLNGKALRVVGDFLYLFAASTALGVIAGLVTAYILKALTFGKHSSVREISMMMLMAYLSYMLAELLELSGILTVFFCGISMSHYAWHNVTEISRTTTRHVFATMSFIAETFIFLYVGMDALDIEKWRMTHLRFGNLMGIYSCLIFLILLGRAAFVFPLSALVNYMNRRVEDTPSITLQHQIIIWWAGLMRGAVSIALAFKQFTFSGVTSDPVKATMITNTIIVVLFTTLVFGCVTKPLVRHLLPHHHARRVDKRPDESGSGSGSPVGDLNLPLLSFHESAETNISRAKESLSMLIESPVYTIHYYWRKFDDAYMRPIFGGPCSNPNPSPNPSEC 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05428 544 Gene3D - 151 203 - -
Vivi3g05428 544 Pfam Sodium/hydrogen exchanger family 34 450 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vivi3g05428 544 NCBIfam sodium/hydrogen exchanger 3 30 453 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi3g05428 544 PRINTS Na+/H+ exchanger signature 90 101 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi3g05428 544 PRINTS Na+/H+ exchanger signature 119 127 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi3g05428 544 PRINTS Na+/H+ exchanger signature 104 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi3g05428 544 PRINTS Na+/H+ exchanger signature 159 169 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vivi3g05428 544 PANTHER SODIUM/HYDROGEN EXCHANGER 22 534 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05428 Vivi-Chr3 112085233 112089555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05428 10 544 Antiporters AT5G55470 67.724 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05428 - - gmx:100813332 803.127