Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05401 ATGGAATCGGATCTCGGCAAGCTCTTCATTGGAGGAATATCGTGGGACACGGATGAGGAACGTCTCAGGGAGTATTTTGCGACATATGGGGAGGTGATTGAGGCTGTGATCATGCGGGATCGCGCAACGGGACGTGCTCGTGGTTTTGGTTTTGTTGTGTTTGCTGATCCCGCTGTTGCTGAGAGAGTCATTGTCGATAAGCACATAATCGATGGTCGCACTGTTGAAGCAAAGAAAGCTGTTCCTAGAGATGATCAGAACAATTTAAACAGACAGACTGGTAGTGTACAGGGATCGCCTGGTCCCGGACGTACAAAGAAGATTTTCGTTGGAGGCTTACCGTCAACAATCACCGAAAGTGATTTCAAGATGTATTTTGATCAATTTGGTACGATTACCGATGTTGTTGTTATGTACGATCACAATACACAAAGGCCAAGAGGCTTTGGCTTCATCACATTTGATTCAGAAGAAGCGGTGGATAGAGTTCTTTACAAAACATTCCACGAACTCAATGGAAAGATGGTTGAAGTCAAAAGGGCGGTGCCGAAAGAACTTTCCCCGGGTCCTACCCGAAGCCCGTTGATAGGAGGATATAACTATAGTTTGAATAGTAGGGCAAGTAGCTACCTAAACAATTATGGTCAAGGTTTTAGTATGAGTCCGATAGGAGGATATGGAGTCAGAATGGATAGTAGGTTTAGTCCGCTTACTGGCGGTAGAACTGGTTTTACACCTTTTGGAAACACCGGTTATGGAATGGGGATGAATTTGGATTCTGGATTGAGCCCAAACTTTGGAGGGAACTCTAATTTTGGGAACAATTTAGGGTACGGTCGAATCTTCAGTCCTTTCTATAGCGGCAACTCAAGCAGATATGCTACTCCGATAGGCTATAACGGTGGTAACGGAAGAGGCGATTCTCTTATGAACTCGACTTCTAGGAATGTCTGGGGTAATGGGGGACTGAGCAGTGCCAATAACCCGGTTAGTCCCGGTGCATTCTTGGGATCTGGAAGTGGAGCTTTCGGTGTTTCAATTGGAAATAACGGCACAAACTGGGGTGCTTCCATTCCAGCTCAGGGCGGAGGGGCTGCTTCCGGCTATGCTACTGGGAATAATGTTTACGAAGGCGGAGATAACAACTTTGGATTAGGTGCTGCAGGGTATGGAAGAAACAACAATGCAGCTGTGAATCCAAACTCCACATTTAATGCATCGGCTGGTGGTTACGACGGATCATATGGAGATTTATACCGCAGTGGCAGCGGTTCGGTTTACAATGACAATGCTTGGAGATCCGCCGCTTCTGAGATAGACGGTTCTGGCTCATTCAGTTATGGTCTTGGTAGTATTGCGTCAGAAGATCCTGTGAAGACTTCCGAGGATTATATTGGAAGCTACAATGTTGCAAGTAGACAACCTAATAGAGGAATCGCTGCTTAG 1446 0.4606 MESDLGKLFIGGISWDTDEERLREYFATYGEVIEAVIMRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNNLNRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGGYNYSLNSRASSYLNNYGQGFSMSPIGGYGVRMDSRFSPLTGGRTGFTPFGNTGYGMGMNLDSGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYNGGNGRGDSLMNSTSRNVWGNGGLSSANNPVSPGAFLGSGSGAFGVSIGNNGTNWGASIPAQGGGAASGYATGNNVYEGGDNNFGLGAAGYGRNNNAAVNPNSTFNASAGGYDGSYGDLYRSGSGSVYNDNAWRSAASEIDGSGSFSYGLGSIASEDPVKTSEDYIGSYNVASRQPNRGIAA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05401 481 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vivi3g05401 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Vivi3g05401 481 Gene3D - 103 189 IPR012677 -
Vivi3g05401 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vivi3g05401 481 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Vivi3g05401 481 MobiDBLite consensus disorder prediction 86 100 - -
Vivi3g05401 481 CDD RRM2_Hrp1p 107 184 - -
Vivi3g05401 481 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Vivi3g05401 481 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vivi3g05401 481 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vivi3g05401 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Vivi3g05401 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Vivi3g05401 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Vivi3g05401 481 MobiDBLite consensus disorder prediction 81 105 - -
Vivi3g05401 481 Gene3D - 6 88 IPR012677 -
Vivi3g05401 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Vivi3g05401 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05401 Vivi-Chr3 110934626 110938074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05401 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.319 3.48e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05401 K14411 - gmx:100794390 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05401 3 110934626 110938074 Vivi3g05401 3 110934626 110938074 ECH