Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05398 ATGATGCCAAGTGTTACGACAAATCCATCCGACAAAGATTCCGAACCATTTGTCGAAACCGATCCAACCGGAAGATATGGAAGATACGACGAACTCCTAGGGTCCGGCGCTGTGAAAAAAGTATACAGAGCATTTGATCAAGAAGAAGGAATAGAAGTAGCTTGGAATCAAGTTAAGCTCAGAAACTTCAGCAAAGACCCTGCAATGGTGGATAGGCTTTACTCTGAAGTGAGGCTGCTTAGAAGCATGACAAATAAAAACATCATTGCTCTTTACAGTGTTTGGAGAGATGAGAAACATAACACTCTGAATTTCATTACTGAGGTTTGCACAAGTGGGAACTTGAGGGAGTATAGGAAGAAACATAAACATGTTTCTGTTAGGGCTTTGAAGAAGTGGTCTAAGCAGATTCTAGAAGGGTTGAATTATCTGCATGTTCATGATCCTTGTATCATTCATAGAGACCTCAATTGCAGCAATGTTTTTGTCAATGGAAATACTGGCCAGGTTAAGATTGGAGACTTAGGATTGGCAGCAATTGTGGGAAAGAACCATTCAGCACATTCAGTCTTAGGGACACCAGAATTTATGGCACCAGAACTATATGAAGAGAACTACACAGAAATGGTGGACATATACTCATTTGGAATGTGTGTATTAGAGATGGTGACACTAGAGATTCCATATAGTGAATGTGACAGTGTTGCAAAGATATACAAGAAGGTTTCTTCAGGTGTGAGACCACAATCCTTAAACAAGATTAAAGATGCAGAGGTTAAGGCTTTCATTGAAAAATGTCTTGCTCAACCAAGGGCTAGACCTTCTGCTCAAGAATTGCTCAAGGATCCTTTCTTTGATGTTTTAGATGATGATGAAAATGATAATGATGATTATAACTAA 900 0.3922 MMPSVTTNPSDKDSEPFVETDPTGRYGRYDELLGSGAVKKVYRAFDQEEGIEVAWNQVKLRNFSKDPAMVDRLYSEVRLLRSMTNKNIIALYSVWRDEKHNTLNFITEVCTSGNLREYRKKHKHVSVRALKKWSKQILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKNHSAHSVLGTPEFMAPELYEENYTEMVDIYSFGMCVLEMVTLEIPYSECDSVAKIYKKVSSGVRPQSLNKIKDAEVKAFIEKCLAQPRARPSAQELLKDPFFDVLDDDENDNDDYN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05398 299 SUPERFAMILY Protein kinase-like (PK-like) 22 286 IPR011009 -
Vivi3g05398 299 MobiDBLite consensus disorder prediction 1 23 - -
Vivi3g05398 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05398 299 PIRSF TyrPK_CSF1-R 80 297 - -
Vivi3g05398 299 PIRSF TyrPK_CSF1-R 28 129 - -
Vivi3g05398 299 CDD STKc_WNK 25 285 - -
Vivi3g05398 299 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Vivi3g05398 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi3g05398 299 FunFam probable serine/threonine-protein kinase WNK9 110 291 - -
Vivi3g05398 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 286 - -
Vivi3g05398 299 Gene3D Transferase(Phosphotransferase) domain 1 110 289 - -
Vivi3g05398 299 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05398 Vivi-Chr3 110649141 110651123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05398 11 286 MAP Kinase Kinase Kinase AT5G55560 84.783 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi3g05398 Pkinase 2.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05398 K08867 - gmx:100782039 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05398 3 110649141 110651123 Vivi3g05398 3 110649141 110651123 ECH
Vivi3g05398 3 110649141 110651123 Vivi7g02656 7 90423320 90425574 PCT