Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05391 ATGAACGCCGACGCCGGTGAAACTCAATTCCTGCAACAAAATCTCGGCGAGATGGAAGAAAACAAACACGACGATCCAAATCAAACTGGGTTACAACCGGATTCTACTGACGGAGCTACCACCTCCGGAAACACCGGCGGAGCTAGATACAAGCTGATGTCCCCGGCGAAGCTCCCGATCTCTAGGTCGCCGGTTTTAACTATTCCTCCAGGACTAAGTCCGACTTCCTTTCTAGAATCACCAGTTCTTCTCTCAAACATGAAGGTAGAACCGTCACCTACAACAGGTTCCCTTCCTAGGCTTCAACAAACATCACATGGTTTTATGACTTCTTTCACGTCAGCTGCGTTTCCTGTAACCACTGTATGCTACAATACTAATACTGTTGATGACGGAAAATCCAGCTTCTTTGAGTTTAAACCGCATAATAGATCAAATATGGTTCCTGCTAACTTTGACAACCACGCATGTGAAAAATCTACTCAAATTGACGGTCAAGGAAAGGTTCAAACTTTTGTCTCGTTACCGTTAGTCAAAAGTGAAATTGCAGTCCCTTCAGATGAAATAAGTCTATCAGCAACACCTCTTCAAATGGTTACTTCAGGGGCTAGTGCTCATGTTGAAGTCGAGTTGGACGAATCGAACCCTGGTGGCAACATAGCAACCGGGATTCAAGCATCACTAGTTGATGGTAGGGGCAGTGGACTTTCAGCTGCTGCTGACAAGGTATCTGATGATGGATACAATTGGCGGAAATATGGACAGAAGCTTGTTAAAGGATGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAATTGTGAAGTGAAGAAACTCTTCGAACGCTCTCATGATGGCCAAATCACTGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAACCGAGCCGTCGATACTCTGGTGGAAATATTATGTCTGTGCAAGAAGAGAGATCTGATAGGGCTTCTTTGAATAGCCGTGACGACAAAGGCTTAAATAATTACGGTCCAATGCCTCATGCAGCTGAGCGTGACAGCACTCCAGAGCTATCACCTATAGCAACAAACAATGATAGTCCAGAGGGTGCAGGGTTTTTGTCAAACCGAAATAATGATGAGGCTGATGAAGATGATCCTTTCTCAAAACGAAGAAAAATGGATCTTGATATCATTCCTGTAGTTAAGCCTATCCGGGAGCCACGAGTTGTTGTACAGACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGAAAATATGGGCAGAAGGTGGTAAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAACGCTGGTTGCCCGGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCGAAAGCTGTAATTACCACATACGAGGGTAAACACAATCATGACGTACCAACTGCAAGGAATAATAGTCATGACATGGCAGGACCATCAGCTGCAGGTGGTCATCAGGCACGAATTCGGCAAGAAGAAAGCGATACTATTAGCCTTGACCTTGGAATGGGCATTAGCCCAAACGCTGAAATTAGATCAAACGGTCAAGGGAGAATGATGATGCGAAATGAATACAGCGACGGCCAAACTCACACCCACACCGGTAATTCCAGTTTCAAGTTTGTTCATACTGCACCACCTCCGGGATACTATGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAATCCAAGTGATAGTTATCCTTGCCCACAGAACATGGGAAGAATACTGATGGGTCCGTAA 1782 0.4444 MNADAGETQFLQQNLGEMEENKHDDPNQTGLQPDSTDGATTSGNTGGARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTSHGFMTSFTSAAFPVTTVCYNTNTVDDGKSSFFEFKPHNRSNMVPANFDNHACEKSTQIDGQGKVQTFVSLPLVKSEIAVPSDEISLSATPLQMVTSGASAHVEVELDESNPGGNIATGIQASLVDGRGSGLSAAADKVSDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGNIMSVQEERSDRASLNSRDDKGLNNYGPMPHAAERDSTPELSPIATNNDSPEGAGFLSNRNNDEADEDDPFSKRRKMDLDIIPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPSAAGGHQARIRQEESDTISLDLGMGISPNAEIRSNGQGRMMMRNEYSDGQTHTHTGNSSFKFVHTAPPPGYYGVLNNNSNPYGSRENPSDSYPCPQNMGRILMGP 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05391 593 MobiDBLite consensus disorder prediction 352 369 - -
Vivi3g05391 593 Gene3D WRKY domain 401 477 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g05391 593 Gene3D WRKY domain 236 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g05391 593 SUPERFAMILY WRKY DNA-binding domain 242 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g05391 593 ProSiteProfiles WRKY domain profile. 239 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g05391 593 MobiDBLite consensus disorder prediction 28 48 - -
Vivi3g05391 593 ProSiteProfiles WRKY domain profile. 411 476 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g05391 593 SMART WRKY_cls 244 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g05391 593 SMART WRKY_cls 416 475 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g05391 593 MobiDBLite consensus disorder prediction 318 384 - -
Vivi3g05391 593 Pfam WRKY DNA -binding domain 245 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g05391 593 Pfam WRKY DNA -binding domain 417 473 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g05391 593 MobiDBLite consensus disorder prediction 1 16 - -
Vivi3g05391 593 FunFam WRKY transcription factor 235 304 - -
Vivi3g05391 593 MobiDBLite consensus disorder prediction 471 495 - -
Vivi3g05391 593 MobiDBLite consensus disorder prediction 1 50 - -
Vivi3g05391 593 SUPERFAMILY WRKY DNA-binding domain 408 476 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g05391 593 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 162 503 IPR044810 GO:0003700
Vivi3g05391 593 FunFam WRKY transcription factor 33 403 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05391 Vivi-Chr3 110479705 110485250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05391 53 593 WRKY Transcription Factor Family AT4G26640 54.367 5.46e-179 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi3g05391 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05391 - - gmx:100781491 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05391 3 110479705 110485250 Vivi3g05391 3 110479705 110485250 ECH
Vivi3g05391 3 110479705 110485250 Vivi7g02654 7 90382017 90385714 PCT