Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05390 ATGAACGCCGACGCCGGTGAAACTCAATTCCTGCAACAAAATCTCGGCGAGATGGAAGAAAACAAACACGACGATCCAAATCAAACTGGGTTACAACCGGATTCTACTGACGGAGCTACCACCTCCGGAAACACCGGCGGAGCTAGATACAAGCTGATGTCCCCGGCGAAGCTCCCGATCTCTAGGTCGCCGGTTTTAACTATTCCTCCAGGACTAAGTCCGACTTCCTTTCTAGAATCACCAGTTCTTCTCTCAAACATGAAGGTAGAACCGTCACCTACAACAGGTTCCCTTCCTAGGCTTCAACAAACATCACATGGTTTTATGACTTCTTTCACGTCAGCTGCGTTTCCTGTAACCACTGTATGCTACAATACTAATACTGTTGATGACGGAAAATCCAGCTTCTTTGAGTTTAAACCGCATAATAGATCAAATATGGTTCCTGCTAACTTTGACAACCACGCATGTGAAAAATCTACTCAAATTGACGGTCAAGGAAAGGTTCAAACTTTTGTCTCGTTACCGTTAGTCAAAAGTGAAATTGCAGTCCCTTCAGATGAAATAAGTCTATCAGCAACACCTCTTCAAATGGTTACTTCAGGGGCTAGTGCTCATGTTGAAGTCGAGTTGGACGAATCGAACCCTGGTGGCAACATAGCAACCGGGATTCAAGCATCACTAGTTGATGGTAGGGGCAGTGGACTTTCAGCTGCTGCTGACAAGGTATCTGATGATGGATACAATTGGCGGAAATATGGACAGAAGCTTGTTAAAGGATGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAATTGTGAAGTGAAGAAACTCTTCGAACGCTCTCATGATGGCCAAATCACTGAGATAGTTTACAAGGGAACACATGATCATCCTAAACCTCAACCGAGCCGTCGATACTCTGGTGGAAATATTATGTCTGTGCAAGAAGAGAGATCTGATAGGGCTTCTTTGAATAGCCGTGACGCTGAGCGTGACAGCACTCCAGAGCTATCACCTATAGCAACAAACAATGATAGTCCAGAGGGTGCAGGGTTTTTGTCAAACCGAAATAATGATGAGGCTGATGAAGATGATCCTTTCTCAAAACGAAGAAAAATGGATCTTGATATCATTCCTGTAGTTAAGCCTATCCGGGAGCCACGAGTTGTTGTACAGACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGAAAATATGGGCAGAAGGTGGTAAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAACGCTGGTTGCCCGGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCGAAAGCTGTAATTACCACATACGAGGGTAAACACAATCATGACGTACCAACTGCAAGGAATAATAGTCATGACATGGCAGGACCATCAGCTGCAGGTGGTCATCAGGCACGAATTCGGCAAGAAGAAAGCGATACTATTAGCCTTGACCTTGGAATGGGCATTAGCCCAAACGCTGAAATTAGATCAAACGGTCAAGGGAGAATGATGATGCGAAATGAATACAGCGACGGCCAAACTCACACCCACACCGGTAATTCCAGTTTCAAGTTTGTTCATACTGCACCACCTCCGGGATACTATGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAATCCAAGTGATAGTTATCCTTGCCCACAGAACATGGGAAGAATACTGATGGGTCCGTAA 1743 0.4452 MNADAGETQFLQQNLGEMEENKHDDPNQTGLQPDSTDGATTSGNTGGARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTSHGFMTSFTSAAFPVTTVCYNTNTVDDGKSSFFEFKPHNRSNMVPANFDNHACEKSTQIDGQGKVQTFVSLPLVKSEIAVPSDEISLSATPLQMVTSGASAHVEVELDESNPGGNIATGIQASLVDGRGSGLSAAADKVSDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGNIMSVQEERSDRASLNSRDAERDSTPELSPIATNNDSPEGAGFLSNRNNDEADEDDPFSKRRKMDLDIIPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPSAAGGHQARIRQEESDTISLDLGMGISPNAEIRSNGQGRMMMRNEYSDGQTHTHTGNSSFKFVHTAPPPGYYGVLNNNSNPYGSRENPSDSYPCPQNMGRILMGP 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05390 580 MobiDBLite consensus disorder prediction 323 337 - -
Vivi3g05390 580 Pfam WRKY DNA -binding domain 245 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g05390 580 Pfam WRKY DNA -binding domain 404 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g05390 580 SUPERFAMILY WRKY DNA-binding domain 242 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g05390 580 ProSiteProfiles WRKY domain profile. 239 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g05390 580 FunFam WRKY transcription factor 33 390 456 - -
Vivi3g05390 580 FunFam WRKY transcription factor 235 304 - -
Vivi3g05390 580 MobiDBLite consensus disorder prediction 293 371 - -
Vivi3g05390 580 MobiDBLite consensus disorder prediction 28 48 - -
Vivi3g05390 580 MobiDBLite consensus disorder prediction 458 482 - -
Vivi3g05390 580 Gene3D WRKY domain 236 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g05390 580 Gene3D WRKY domain 388 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g05390 580 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 162 490 IPR044810 GO:0003700
Vivi3g05390 580 SMART WRKY_cls 403 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g05390 580 SMART WRKY_cls 244 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi3g05390 580 MobiDBLite consensus disorder prediction 1 16 - -
Vivi3g05390 580 MobiDBLite consensus disorder prediction 1 50 - -
Vivi3g05390 580 MobiDBLite consensus disorder prediction 339 356 - -
Vivi3g05390 580 SUPERFAMILY WRKY DNA-binding domain 395 463 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi3g05390 580 ProSiteProfiles WRKY domain profile. 398 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05390 Vivi-Chr3 110479705 110485250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05390 53 580 WRKY Transcription Factor Family AT4G26640 53.929 5.60e-176 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi3g05390 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05390 - - gmx:100781491 870.537