Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05384 ATGCAAACATCACAGAAACATGAAATTTCTTACGGCTCTGACACGTTCTACGTTGAGCCTGTGCAGAATATCGAGTCATATAGCTTACCCTCAGGTGAGAATCTTGACAACTATTCTTCCTCAGATAATAGCAGCCAAGCATTCTATCTTTCTCATCAGGCTCTAGAACCGTATAGCGGCCATGAATCTGCTTCAACGAGTAATAACAGTTTCCCTTACCAAAATTCTCCGACCACTCTCGGTTTCTCTCAGAACAATAGTCCTGTGTCCAAGCTAGAGTCAAATTCACGCGTGTTAATCCAACAAAATTCTCTTGAATTTGTTAATAGTTCCCCTGAGGACGGCAATTCTTACTTGACACAACATGATTTTGATGACCTCAGCCATAAGATACAAGAGCTCGAATCTGTTATGCTCGGACCGAGCGCGGATATGCTAGATATGTATGATACTGAAATTCAAGAGGAGTCTGGTTTGTTCTCGTTAGAAGCGGAAAACTGGAAGAGAAATGTTGAGATGGTGTCAAGAGGGGACGTGAAAGAAATGCTTTATACTTGTGCAAAAGCAGTAGCTGTGAATGATGTGGACACAATTGAATGGATGGTTACTGAGTTACGCAAAATCGTATCCATTTCGGGAAGTCCAATCCAACGATTGGGGGCGTACATGTTGGAGGCTCTTGTTTCCAAAATGGCTTCTTCTGGAAGTACGATCTACAATTCGTTGAAATGTAGCGAGCCTACCGGTAATGAACTACTTTCCTACATGCATGTACTTTATGAAATATGTCCATACTTTAAGTTTGGGTATATGTCGGCAAATGGAGCGATTGCTGAAGCTATGAAGGATGAAAATGAAATACACATAATTGATTTTCAAATTGCACAAGGAACTCAATGGGTGAGTCTAATTCAGGCTCTTGCTCGCCGGCCTGAAGGACCGCCGAAAATCAGAATAACAGGTGTTGATGACTCGTTTTCCGCTTATGCCCGCGGCGGGGGCGTTGATATAGTAGGGGAAAGGTTATCAACACTTGCACAGTCGTGTAATGTTCCTTTCGAGTTCCACGCTGTTAGAGTTTCTGCTTCCGAGGTCCAACTCGAAGACTTTGAACTTCGACCGTACGAAGCCGTGGCTGTGAATTTCGCCATTATGCTACACCATGTGCCAGACGAAACCGTGAACAGTCATAATCATCGCGACAGGCTGTTACATTTGGCTAAATATTTTTCTCCCAAGGTGGTGACTCTAGTCGAGCAAGAATTCAACACCAACAACGCCCCATTCCTACCGCGTTTCCTCGAGACAATGAACTACTACTCCGCCGTCTACGAATCAATCGACGTCGTTCTTCCAAGGGACCACAAAGAGAGGATTAACGTCGAACAGCACTGTCTGGCTCGAGAAGTTGTCAACCTTGTAGCCTGCGAAGGAGAAGAGAGAGTCGAACGTCACGAGCTTCTAACTAAGTGGCAAACGCGTTTCACGATGGCCGGATTCACGCCTTATCCGTTGAGCTCGTTCATCAACTCTTCAATCAAGAATCTTCTCGATAGCTACCGCGGACATTACACTCTTGAAGAGAGAGATGGTGCACTATATCTCGGTTGGATGAATCAACCTCTTATTGCTTCTTGTGCTTGGAGATGA 1650 0.4455 MQTSQKHEISYGSDTFYVEPVQNIESYSLPSGENLDNYSSSDNSSQAFYLSHQALEPYSGHESASTSNNSFPYQNSPTTLGFSQNNSPVSKLESNSRVLIQQNSLEFVNSSPEDGNSYLTQHDFDDLSHKIQELESVMLGPSADMLDMYDTEIQEESGLFSLEAENWKRNVEMVSRGDVKEMLYTCAKAVAVNDVDTIEWMVTELRKIVSISGSPIQRLGAYMLEALVSKMASSGSTIYNSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKDENEIHIIDFQIAQGTQWVSLIQALARRPEGPPKIRITGVDDSFSAYARGGGVDIVGERLSTLAQSCNVPFEFHAVRVSASEVQLEDFELRPYEAVAVNFAIMLHHVPDETVNSHNHRDRLLHLAKYFSPKVVTLVEQEFNTNNAPFLPRFLETMNYYSAVYESIDVVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHELLTKWQTRFTMAGFTPYPLSSFINSSIKNLLDSYRGHYTLEERDGALYLGWMNQPLIASCAWR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05384 549 ProSiteProfiles GRAS family profile. 170 549 IPR005202 -
Vivi3g05384 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 129 543 IPR005202 -
Vivi3g05384 549 Pfam GRAS domain family 180 549 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05384 Vivi-Chr3 110405151 110408079 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05384 1 549 GRAS Transcription Factor Family AT1G50600 54.809 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi3g05384 GRAS 1.5e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05384 - - gmx:100785400 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g05384 3 110405151 110408079 Vivi7g02650 7 90367947 90370895 PCT