Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05379 ATGCAAACATCACAGAAACACGAAATTTCTTACGGCTCTGACACGTTCTACGTTGAGCCTGTGCAGAATATCGAGTCATATAGCTTACCCTCAGGGGAGAATCTTGACAACTATTCTTCCTCAGATAATAGCAGCCAAGCATTCTATCTTTCTCATCAGGCTCTAGAACCGTATAGCGGACATGAATCTGCTTCAACGAGTAATAACAGTTTCCCTTACCAAAATTCTCCGACCACTCTCGGTTTCTCTCAGAACAATAGTCCTGTGTCCAAGCTAGAGTCAAATTCGCGCGTGTTAATCCAACAAAACTCTCTTGAATTTGTTAATAGTTCCCCTGAGGACGACAATTCTTACTTGACACAACATGATTTTGATGACCTCAGCCATAAGATACAAGAGCTCGAATCTGTTATGCTCGGACCGAACGCGGATATGCTAGATATGTATGATACTGAAATTCAAGGGGAGTCTGGTTTGTTCTCGTTAGAAGCGGAAAACTGGAAGAGAAATGTTGAGATGGTGTCGAGAGGGGACGTGAAAGAAATGCTTTATACTTGTGCAAAAGCGGTAGCTGTGAATGATGTGGACACAATTGAATGGATGGTTACTGAGTTACGCAAAATCGTATCCATTTCAGGAAGTCCAATCCAGCGATTGGGGGCGTACATGTTGGAGGCTCTTGTTTCCAAAATGGCTTCTTCCGGAAGTACGATCTACAATTCGTTGAAATGTAGCAAGCCTACTGGTAATGAACTACTTTCCTACATGCATGTACTTTATGAAATATGTCCGTATTTTAAGTTCGGGTATATGTCGGCAAATGGAGCGATTGCTGAAGCTATGAAGGATGAAAATGAAATACACATAATTGATTTTCAAATTGCACAAGGAACTCAATGGGTGAGTCTAATTCAGGCTCTTGCTCGCCGGCCTGAAGGACCGCCGAAAATCAGAATAACAGGTGTTGATGACTCGTTTTCCGCTTATGCCCGCGGCGGGGGCGTTGATATAGTGGGGGAAAGGTTATCAACACTTGCACAGTCCTGTCATGTTCCTTTCGAGTTCCATGCTGTTAGAGTTTCTGCTTCTGAGGTCCAACTCGAAGACTTTGAACTTCGACCGTACGAAGCCGTGGCGGTGAATTTCGCCATTATGCTACACCACGTGCCAGACGAAACCGTGAACAGTCATAATCACCGCGACAGGCTGTTGCATTTGGCTAAGTATTTTTCTCCCAAGGTGGTGACTCTAGTCGAGCAAGAATTCAACACCAACAACGCCCCATTCCTACCGCGTTTCCTCGAGACAATGAACTACTACTCAGCCGTCTACGAATCAATCGACGTCGTTCTTCCAAGGGATCACAAAGAGAGGATTAACGTCGAACAGCACTGTTTGGCTCGAGAAGTTGTCAACTTAGTAGCCTGCGAAGGAGAAGAAAGAGTCGAACGTCACGAGCTTCTAACAAAGTGGCAAACACGTTTCACAATGGCTGGATTCACGCCTTATCCGTTGAGCTCGTTCATCAATTCTTCGATCAAGAATCTTCTCGATAGCTACCGCGGACATTACACTCTTGAAGAGAGAGATGGTGCACTGTATCTTGGTTGGATGAATCAACCTCTTATTGCTTCTTGTGCTTGGAGATGA 1650 0.4461 MQTSQKHEISYGSDTFYVEPVQNIESYSLPSGENLDNYSSSDNSSQAFYLSHQALEPYSGHESASTSNNSFPYQNSPTTLGFSQNNSPVSKLESNSRVLIQQNSLEFVNSSPEDDNSYLTQHDFDDLSHKIQELESVMLGPNADMLDMYDTEIQGESGLFSLEAENWKRNVEMVSRGDVKEMLYTCAKAVAVNDVDTIEWMVTELRKIVSISGSPIQRLGAYMLEALVSKMASSGSTIYNSLKCSKPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKDENEIHIIDFQIAQGTQWVSLIQALARRPEGPPKIRITGVDDSFSAYARGGGVDIVGERLSTLAQSCHVPFEFHAVRVSASEVQLEDFELRPYEAVAVNFAIMLHHVPDETVNSHNHRDRLLHLAKYFSPKVVTLVEQEFNTNNAPFLPRFLETMNYYSAVYESIDVVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHELLTKWQTRFTMAGFTPYPLSSFINSSIKNLLDSYRGHYTLEERDGALYLGWMNQPLIASCAWR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05379 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 123 543 IPR005202 -
Vivi3g05379 549 MobiDBLite consensus disorder prediction 59 78 - -
Vivi3g05379 549 ProSiteProfiles GRAS family profile. 170 549 IPR005202 -
Vivi3g05379 549 Pfam GRAS domain family 180 549 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05379 Vivi-Chr3 110255313 110258173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05379 1 549 GRAS Transcription Factor Family AT1G50600 54.645 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi3g05379 GRAS 4.8e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05379 - - gmx:100785400 847.425