Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05373 ATGGAAGGGGGTGAAAATAGTAAAACTGAGAACCCTAATTGGGAAATTGAACTAAGAAAGTATGAGAATGTTATAGCTTCAGGAACCAATTCTATGAAAATCAAAGCTATCGTTATGCTTGCTAATCACTCCAAACAAGTCCCTCAACATGTTTTATCCACCACCATACCATTTCTCATTCAGATTCTTGATCATGGCAGCAACACTGAAAATGATTCTCCTCCTAGTTTACTTCAAGAAGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGAGGTGATGGTACTATGGCAGTTGAAATGGGAAGAGTTGGTGTTACACATTCTTTGATAAGATTGTTGCCTCGTGCCGACGGAAAGATGCGGAAAGTTCTGATAAAATGTTTGTTGGTTGTTGTTAGTTTTTGTAATACAAGTAGGACATATGTTGCAGCTAATGGTGGATTAGAAATTATTATTAGTTTGTTGAATACTTGTAGCAGTGATGTTAGATTGTATTTGTTAGAGATTTTGAGTGTGTTGGCGCTTCGGAGGGAGGTTAGGAAGGAACTTGTTAGGTTAGGAGCTCTTCGTTTTATCGTAGAGGCTGCTGGTGTTGGCAGTATGGTTTCTAGAGAAAGGGCATGTCAGTCGATTGGATTGATTGGAGTTACGAGACAGGCTAGGCATACTCTTGTTGAATTAGGAGTTATACCGGTGCTTGTGGAGTTGTTTCGTGTCGGAGATAATGGTGTGAAGCTTGTAGCTGGTAATAGTCTTGGTGTGATGTCGGCTCATGTTGATTACATTAGACCTGTTGGTGAAGCCGGGGCTATACCTCTTTACGCCGAGCTTCTTCAAGGACGTGATGCTTCTGGTAAGGAGATAGCGGAGGATGTGTTTTGTATATTGGGTGTTGCTGAGGCTAATGCCGTTGAAATTGTTGGTCACTTGGTGAGGATTCTTAGAGAAAGTGATGATGAAGCGAAAGCAGCAGCTGCTGATGTGATATGGGATCTGTCGGGATACAAGCACGCAATTTCTGTGATTCGGGATTCAGGTGCGATCTCGATCCTTGTTGAACTTATGGGTCATGGGAGTGAAGAAATAAAGTTGAATGTTTCTGGGGCATTTGCTCAACTAAGCTATGATGAAGCTGGTAGAACAGCCCTTGCTGATGCTGGGGCAATTCCGATTCTCATTGACTTGCTACTCAACGAGACCGAGGAACTAAGGGATAATGTTGTTGAGACTCTTTCCAATTTTCACGAGGACCCGTTATACTGTGATAGAGTATCTGACATAGTTAATGTTCCTTCGTTCCGAAATTTGCAGAATAGACTAATTAGTATTCGTACATCGAACGAGCATATGACTAGATCTTTACGTAGAACGAGTGTTGAGCAGCTAATTTGGAACCCGGATCATGTTTAA 1413 0.4183 MEGGENSKTENPNWEIELRKYENVIASGTNSMKIKAIVMLANHSKQVPQHVLSTTIPFLIQILDHGSNTENDSPPSLLQEAAAYCLKCIACRGDGTMAVEMGRVGVTHSLIRLLPRADGKMRKVLIKCLLVVVSFCNTSRTYVAANGGLEIIISLLNTCSSDVRLYLLEILSVLALRREVRKELVRLGALRFIVEAAGVGSMVSRERACQSIGLIGVTRQARHTLVELGVIPVLVELFRVGDNGVKLVAGNSLGVMSAHVDYIRPVGEAGAIPLYAELLQGRDASGKEIAEDVFCILGVAEANAVEIVGHLVRILRESDDEAKAAAADVIWDLSGYKHAISVIRDSGAISILVELMGHGSEEIKLNVSGAFAQLSYDEAGRTALADAGAIPILIDLLLNETEELRDNVVETLSNFHEDPLYCDRVSDIVNVPSFRNLQNRLISIRTSNEHMTRSLRRTSVEQLIWNPDHV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05373 470 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 311 427 - -
Vivi3g05373 470 SMART arm_5 336 376 IPR000225 GO:0005515
Vivi3g05373 470 SMART arm_5 377 417 IPR000225 GO:0005515
Vivi3g05373 470 SMART arm_5 136 176 IPR000225 GO:0005515
Vivi3g05373 470 SMART arm_5 292 335 IPR000225 GO:0005515
Vivi3g05373 470 SMART arm_5 218 258 IPR000225 GO:0005515
Vivi3g05373 470 SUPERFAMILY ARM repeat 35 191 IPR016024 -
Vivi3g05373 470 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 347 389 IPR000225 GO:0005515
Vivi3g05373 470 Gene3D - 261 439 IPR011989 -
Vivi3g05373 470 SUPERFAMILY ARM repeat 180 419 IPR016024 -
Vivi3g05373 470 Gene3D - 23 260 IPR011989 -
Vivi3g05373 470 Pfam Armadillo/beta-catenin-like repeat 380 414 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05373 Vivi-Chr3 109904634 109910423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05373 266 419 U-box Gene Family AT2G23140 29.560 2.54e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05373 - - gmx:100819735 635.565