Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05368 ATGACTAAACATGCTCTTGAAGAGTCCCTTTTGAATGGTGAAGCTAGTGTAACCAACAACAGTTCTGATTCCAAAAAAGCAGGTGGTAATGAAATTTTAACAAGTTATTTGAATGCTGGGTTTTTTAGCATTCTTACTTTCTCATGGATGACTCCACTGATAACATTAGGAAGTAAAAAGACTTTAAATCATCAAGACCTTCCACTTCTTTCTACTAACGACACTGCCTATGAAACTTTTTCAAATTTTACAAAAAAGCTTGAGTTGGAGTGTGGTAATGTTAGAACTGTGACCACTATTAAACTCGCCAAGGTGCTGTTTTTATCGACATGGGAAGGGATTCTTATATCTGGCATATTTGCATTCTTTTACGTATGTGCTACTTATGTAGGACCTTACCTTATTGACAACCTTGTTCAATATCTCAATGATGAAAACAAGGTTAAAAATGAAGGCTATATTTTGGCTACAACGTTTGTTGCAGCAAAGCTTGTTGAGTGTATTTCGCAAAAGCACTCAATGTTTAGGTACCAACAGGTCGGTGTTAGGATTCAATCAATGTTGGTGTCAATGATCTATGCTAAAGGATTGACACTTTCGTGTCAATCAAAAGAGTCACATAGCAGTGGCGAAATCATCAACTTAATGACTGTTGATGCTCAAAGGATAGGTGAATTTTGTCGGTATATGCATGATCCATGGATGGCTGTTCTACAAGTTTCTTTGGCTTTGTTTATTCTCCATAGAAATGTTGGGGTTGCTTCAGTAGCTGCTTTTGCTGCAACTGTTACTGTGATGTTGCTAAACCTTCCTATAACTTCACTGCAAGAGAGATTCCAAGCTAAGTTAATGGAGTTCAAGGATAAAAGAATGAAGGCGACGTCTGAGGTTCTAATGAACATGAGGATTCTTAAACTTCAAGCGTGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTTAGGAAGTTAGAGGAGATGTGGCTAAAGAAATTTCTTGTTGTTACCGCAATTGTTAGATTTCTCTTCTTTAGCGCCCCGACATTTGTTGCTGTCGTTACTTTCGGTGCTTGTGCTCTTTTAGGCATTCCACTTGAAACAGGAAAGATCTTATCTGCTCTTGCAACATTCAGAATTCTTCAAATGCCTATCTATAATATTCCTGACACAATTTCAGTGATTGCACAAACCAAGGTTTCCCTCGATAGGGTTGTTGCTTTCCTTCGTCTAGATGATTTGCAGACTGATGTGGTGGAGAAGGTTCCGCGAGGTAGTTCTAATATGGCAATTGAAATAGTTAATGGAAATTTCTCTTGGGATTTATCTTCTGTCAATGCAACATTGAAAAACATAAATCTTAGGGTTTTTCATAGTATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCGAGTTTACTTTCTTGTATAATAGGCGAAATACCAAAGATATCTGGTAACTTGAAGGTGTGTGGAACAAAGGCCTATGTCGCTCAATCACCATGGATACAGAGTGGAAAGATAGAAGAGAACATACTATTTGGGAAAGAGATGGATAGGGAAAAGTATGAAAAGGTGCTTGAAGCATGTTCCTTGAAGAAAGACCTAGAGATTTTACCATTTGGTGATCAGACCTTTATTGGAGAGAAAGGAATCAATTTGAGTGGGGGACAGAAGCAAAGAGTACAAATAGCGCGTGCTCTTTACCAAGATGCCGATATATATCTTCTAGACGATCCCTTTAGTGCTGTTGATGCTCATACAGGATCCCATCTCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACCAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCCGACGCTGATCTGATACTTGTCATGAAAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTTACTTCAGGAACCGATTTTATGGAACTTGTAGGCGCACATAGAAACGCATTGTCTTCAGTTAAGTCTTTAGAGAGAAGGCCTACATTTAAAACATCGAGTATTGCTGGAGAAGACACAGGTACATTAAGCGATTATGAACTTGAGCAAGAAGTGGAAAATATAGATGATCGAAACGGCAAGCTAGATGAAACAAATATACCGAAAGGCCAACTTGTTCAAGATGAAGAACGTGAAAAGGGTAGTGTTGGGTTGAAAGTGTTCTGGAAATACATAACAACAGCTTATGGAGGAGCTCTTGTACCTTTCCTATTTCTTTCACACATAGTCACTGTGGTTTTACAAATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGCAGAGCCTGGTATTGGAAGCTTTACTCTGATGGTTGTATATGTTTCTTTGGCAATTGGAATTTCCTTTTCCACCCTTGTCAGAGCATTTCTTGCTGCGATAGTTGGATACAAGACCGCCACCATGCTCTTCAATCAAATGCATTTTAGCTTCATTCGAGCGCCAATGTCATTTTTTGACTCCACCCCAAGTGGAAGAATTCTTAATAGAGCTTCAGCAGACCAAAGTACAGTAGATATGAACATTTCAAATCTAGTATGGGGATTAACCTACAATCTGGTTCAGCTCGTGGGAAATATTGCCGTGATGTCCCAAGCTGCATGGCAGGTGTTGGTAGTATTGATTCCTGTCGTGGTAGCTTGCATATGGTACCAGCGATACTACTCAGCATCAGCTCGGGAATTGGCACGATTAACTGGTATATGCCAAGCGCCAGTTATACAGCATTTTTCTGAAACGATATCCGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGAAATGAATATGCAACTCATAGACAAATATTCCCAACCTAAATTATACAGTGCTAGTGCAATGGAATGGTTGAGTTTCAGATTGGATCTTTTATCCTCTACCGTATTTGCTTTCTGCTTGGTTTTCTTGGTGTCTTTTCCAAGTTCAATAGCTGATCCTAGCATTGCGGGATTGGCTGTGACATATGGGATTAATCTAAATGCTGTACAATTCAAATTAATTAGGTTTCTTTGCAATTTGGAGAACAAAATTATATCGGTAGAACGAATACTTCAGTACACCTCTATCCCAAGTGAAGCACCTCTTGTAATAAAAGACAATCAACCAGATCATTCTTGGCCATCATTGGGAGAGGTTCATGTCCAGGATTTACAGGTTCAATATGCCCCTCACTTGCCTCTTGTTTTACACGGACTTACATGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAAACAACATTAGTGCAAACCCTTTTTAGACTTGTTGAGCCTGTTGCAGGACAAATATTGATAGATAACATCAACATCTCATTGATTGGAGTCCATGATTTACGGTCCAGACTAAGCATAATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAGTAACCTCGACCCGCTGGAAGAGTACACAGATGACCAAATTTGGGAGAAATATCTTAGGCTCTAG 3519 0.3916 MTKHALEESLLNGEASVTNNSSDSKKAGGNEILTSYLNAGFFSILTFSWMTPLITLGSKKTLNHQDLPLLSTNDTAYETFSNFTKKLELECGNVRTVTTIKLAKVLFLSTWEGILISGIFAFFYVCATYVGPYLIDNLVQYLNDENKVKNEGYILATTFVAAKLVECISQKHSMFRYQQVGVRIQSMLVSMIYAKGLTLSCQSKESHSSGEIINLMTVDAQRIGEFCRYMHDPWMAVLQVSLALFILHRNVGVASVAAFAATVTVMLLNLPITSLQERFQAKLMEFKDKRMKATSEVLMNMRILKLQAWEMKFLSKIIQLRKLEEMWLKKFLVVTAIVRFLFFSAPTFVAVVTFGACALLGIPLETGKILSALATFRILQMPIYNIPDTISVIAQTKVSLDRVVAFLRLDDLQTDVVEKVPRGSSNMAIEIVNGNFSWDLSSVNATLKNINLRVFHSMRVAVCGTVGSGKSSLLSCIIGEIPKISGNLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDREKYEKVLEACSLKKDLEILPFGDQTFIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILTSGTDFMELVGAHRNALSSVKSLERRPTFKTSSIAGEDTGTLSDYELEQEVENIDDRNGKLDETNIPKGQLVQDEEREKGSVGLKVFWKYITTAYGGALVPFLFLSHIVTVVLQIASNYWMALATPVSATAEPGIGSFTLMVVYVSLAIGISFSTLVRAFLAAIVGYKTATMLFNQMHFSFIRAPMSFFDSTPSGRILNRASADQSTVDMNISNLVWGLTYNLVQLVGNIAVMSQAAWQVLVVLIPVVVACIWYQRYYSASARELARLTGICQAPVIQHFSETISGSTTIRSFEQESRFNEMNMQLIDKYSQPKLYSASAMEWLSFRLDLLSSTVFAFCLVFLVSFPSSIADPSIAGLAVTYGINLNAVQFKLIRFLCNLENKIISVERILQYTSIPSEAPLVIKDNQPDHSWPSLGEVHVQDLQVQYAPHLPLVLHGLTCTFTAGAKTGIVGRTGSGKTTLVQTLFRLVEPVAGQILIDNINISLIGVHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDDQIWEKYLRL 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05368 1172 Gene3D - 408 671 IPR027417 -
Vivi3g05368 1172 Gene3D - 1042 1171 IPR027417 -
Vivi3g05368 1172 CDD ABC_6TM_ABCC_D2 740 1034 IPR044726 GO:0140359
Vivi3g05368 1172 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Vivi3g05368 1172 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Vivi3g05368 1172 CDD ABCC_MRP_domain1 429 629 - -
Vivi3g05368 1172 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 1022 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05368 1172 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524|GO:0016887
Vivi3g05368 1172 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 1167 - -
Vivi3g05368 1172 Pfam ABC transporter transmembrane region 115 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05368 1172 Pfam ABC transporter transmembrane region 742 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05368 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1050 1167 IPR027417 -
Vivi3g05368 1172 FunFam ABC transporter C family member 5 703 1040 - -
Vivi3g05368 1172 Pfam ABC transporter 1076 1165 IPR003439 GO:0005524
Vivi3g05368 1172 Gene3D ABC transporter type 1, transmembrane domain 704 1040 IPR036640 GO:0005524|GO:0016020
Vivi3g05368 1172 Gene3D ABC transporter type 1, transmembrane domain 94 407 IPR036640 GO:0005524|GO:0016020
Vivi3g05368 1172 SUPERFAMILY ABC transporter transmembrane region 739 1041 IPR036640 GO:0005524|GO:0016020
Vivi3g05368 1172 FunFam ABC transporter C family member 10 98 411 - -
Vivi3g05368 1172 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Vivi3g05368 1172 SMART AAA_5 456 629 IPR003593 GO:0016887
Vivi3g05368 1172 SMART AAA_5 1085 1171 IPR003593 GO:0016887
Vivi3g05368 1172 FunFam ABC transporter C family member 5 414 661 - -
Vivi3g05368 1172 SUPERFAMILY ABC transporter transmembrane region 112 407 IPR036640 GO:0005524|GO:0016020
Vivi3g05368 1172 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05368 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 651 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05368 Vivi-Chr3 109801401 109807637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05368 410 645 Calmodulin-binding Proteins AT2G36910 30.952 1.00e-24 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05368 - K05666 gmx:106794105 1805.03