Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05361 ATGACTAAAGATATTCTTGAAGAGTCCCTTTTGAAGGGTGAAGCTAGTGTAAGCAACAACAGTTTTGATTCCAAAAAGGCAGAAGAAAATGAAATTTTAACCAGTTATTCAAGAGCTGGATTTTTCAGCATTCTCACTTTCTCATGGATGACTCCACTTATAACATTAGGGAGTAAAAAGACCTTAAACCATCAAGACCTTCCACTTCTTTCTACCAATGACACTGCCTATGGATCTTTTTCAACTTTCAGAAAAAAGCTTGAGTTGGAGTGTGGTAATGTTAGGACTGTGACAACTATTAAGCTCGCCAAGGTGCTGTTTTTATCGACATGGAAATGGATTCTTATATCTGGCATATTTGCATTCTTGTACGTGTGTGCTTCTTATGTTGGACCTTACCTTATTGACAACCTTGTTCAATATCTCAATGATGAAAACAAGGTTAAAAATGAAGGCTATGTTTTGGCTACAACATTTGTTGTGGCGAAAGTTGTTGAGTATCTTTCGCAAAGGCACATGCTGTTTAAGTTCCGACAGGTTGGTGTTAGGATGCAATCAATGTTGTTGTCAATGATCTATGCTAAAGGTTTGACACTTTCGTGTCAATCAAAAGAGAGACATAGCAGTGGCGAAATCATCAACATAATGACTGTTGATGCTCAAAGGATAGGTGAATTTTGTTGGTATATGCATGATCCATGGATCGCTGTTCTACAAATTTCTTTGGCTTTGTTTATTCTTCATAAAAATGTCGGGGTTGCTTCAGTAGCTGCTTTTGCGGCAACTGTTATTGTGATGTTGCTAAACCTTCCTATGACTTCACTGCAAGAGAGGTTCCAAGCTAAGTTAATGGAGTTCAAGGATAAAAGAATGAAGGCGACGTCTGAGGTTCTAATGAACATGAGGATTCTTAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTCAGGAAGTTAGAGGAGATGTGGCTAAAGAAATTTCTGGTTGTTACCGCAATTGTTAAATTTCTTTTCTTTAGCGCCCCGACATTTGTTGCTGTTGTTACTTTCGGTGCTTGTTTTCTTCTAGGCATTCCACTTGAAACAGGAAAGATCTTATCTGCTCTTGCAACATTCAGAATTCTTCAAATTCCTATCTATAATATTCCTGACACAATTTCAGTGATTGCACAAACCAAGGTTTCCCTCGATAGGGTTGTCGTTTTTCTTCGTCTAGATGATTTGCAGAACGATGTGGTGGAGAAGGTTCCGCGAGGTACTTCTGATATAGCAATTGAAATAGTTGATGGAAATTTCTCTTGGGATTTATCTTCTGTCAATGCAACGTTGAAAAACATAAATCTTAGAGTTTTTCATAGTATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCGAGTTTACTTTCTTGTATAATAGGTGAAATGCCAAAGATATCTGGTAACTTGAAGGTGTGTGGAACAAAAGCTTATGTTTCTCAATCACCATGGATACAGAGTGGAAAGATAGAAGAGAACATACTGTTTGGGAGAGAGATGGATAGGGAAAAGTATGAGAAAGTGCTAGAAGCATGTTCCTTGAAGAAAGACCTAGAGGTTCTACCATTTGGGGATCAGACCATTATTGGAGAAAAAGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAGATAGCACGTGCTCTTTATCAAGATGCCGATATATATCTACTCGATGATCCCTTTAGTGCTGTTGATGCTCACACAGGATCCCATCTTTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCGGATGCTGATTTGATACTGGTCATGAAAGAAGGAAGGATAACTCAATCGGGAAAGTACAATGATATTCTTACGTCAGGGACCGATTTTATGGAACTTGTAGGCGCACATAGAGCAGCGTTGTCTTCAGTTAAATCCTTACAGAGAAGGCCTACATTTAAAACATCGCGTATAACCGGAGAAGATACAGGTTCATTAAGTGATTTTGAACTTGAGCAAGAAATCGAAAAAGTAGATGATCCAAACGACAAGTTAGATGAAACAATTGTGCCGAAAGGCCAACTTGTTCAAGAAGAAGAAAGTGAAAAGGGTAGTGTTGGGTTTAAATTGTTTTGGAAATACCTAACAACAGCTTATGGAGGGGCTCTTGTACCTTTCCTATTTCTTTCACAGATACTCACTGTGGTTTTACAAATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGCAGAACCTGGTGTTGAAAGCTTTACTGTGATGGTTGTCTATGTTTCTTTGGCAATTGGAATTTCCTTTTCCACCCTTGTCAGAGCTTTTCTTGCTGCGATAGCTGGATACAAGACCGCCACCATGCTCTTCAATCAAATGCATTTGAGCTTCTTTCGAGCGCCAATGTCATTTTTCGATTCCACCCCAAGTGGAAGAATTCTTAATAGAGCTTCAGCAGACCAAAGTACAGTAGATATGGATATTTCAGATCTAGTGTGGGGATTTACCTACAATCTGATTCAGCTATTGGGAAGTATTGCTGTGATGTCACAAGCTGCTTGGCAGGTGTTCGTAGTATTGATTCCTGTCGTGGCAGCTTGCATATGGTACCAGCGATACTACTCAGCCTCAGCACGGGAATTGGCACGATTAACTGGTATATGCCAAGCGCCAGTAATACAACATTTTTCGGAAACGATATCCGGATCAACAACCATAAGATGTTTTGAGCAAGAATCAAGATTTAATGAAATGAATATGCAATTGATAGACAAATATTCCCAACCTAAATTATACAGTTCTAGTGCAATTGAATGGTTGAATTTCAGATTGGGCATAAAACAGCAATTTTGTTTTTGTGAAGGCATTGCGGGATTGGCTGTGACATATGGGATTAGTCTTAATGCTGTACAATTCAAATTAATTTGGTTTCTTTGCAATTTGGAGAACAAAATTGTATCTGTAGAAAGAATACTTCAGTACACCTCCATCCCAAGTGAATCACCTCTTGTAATAAAAGACAATCAACCAGATCATTCTTGGCCATCACTCGGAGAAGTCCACGTCCAGGATTTACAGGTTCAATATGCCCCTCACTTGCCTCTTGTTTTATGCGGACTTACATGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAAACAACCTTAGTGCAAGCCCTTTTTAGACTTGTTGAGCCTGTTGCAGGACAAATATTGATAGATAACATCAACATCTCATTGATTGGAGTCCATGATTTACGGTCCAGACTAAGCATAATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAGTAACCTCGACCCGCTGGAAGAGTACACAGATGAACAAATTTGGGAGGCTCTTGATATGTGCCAACTTGGAGATGAAGTGAGAAAGAAAGAAAGCAAGCTTGACTTCACAGTAACTGAGAATGGAGAAAACTGGAGCATGGGTCAAAGGCAATTAGTCTGCCTCGGCCGTGTTCTCCTTAAGAAAAGCAAGATCTTAGTGCTCGATGAAGCTACTGCATCAGTCGATACGGCTATGGATAATATAATTCAACAGACAGTTAAGCAACATTTCTCTGATTGCTCCGTCATTACCATTGCTCATAGAATAACTTCAATCCTCGACAGCGACATGGTTTTGTTTCTCGGTGAAGGGCTTATTGAGGAATATGATTCACCAAAGAAGTTGCTTAAGGACAAATCTTCATCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGGTCAAACACTGGTTTTGGAAGATGA 3873 0.3945 MTKDILEESLLKGEASVSNNSFDSKKAEENEILTSYSRAGFFSILTFSWMTPLITLGSKKTLNHQDLPLLSTNDTAYGSFSTFRKKLELECGNVRTVTTIKLAKVLFLSTWKWILISGIFAFLYVCASYVGPYLIDNLVQYLNDENKVKNEGYVLATTFVVAKVVEYLSQRHMLFKFRQVGVRMQSMLLSMIYAKGLTLSCQSKERHSSGEIINIMTVDAQRIGEFCWYMHDPWIAVLQISLALFILHKNVGVASVAAFAATVIVMLLNLPMTSLQERFQAKLMEFKDKRMKATSEVLMNMRILKLQAWEMKFLSKIIQLRKLEEMWLKKFLVVTAIVKFLFFSAPTFVAVVTFGACFLLGIPLETGKILSALATFRILQIPIYNIPDTISVIAQTKVSLDRVVVFLRLDDLQNDVVEKVPRGTSDIAIEIVDGNFSWDLSSVNATLKNINLRVFHSMRVAVCGTVGSGKSSLLSCIIGEMPKISGNLKVCGTKAYVSQSPWIQSGKIEENILFGREMDREKYEKVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILTSGTDFMELVGAHRAALSSVKSLQRRPTFKTSRITGEDTGSLSDFELEQEIEKVDDPNDKLDETIVPKGQLVQEEESEKGSVGFKLFWKYLTTAYGGALVPFLFLSQILTVVLQIASNYWMALATPVSATAEPGVESFTVMVVYVSLAIGISFSTLVRAFLAAIAGYKTATMLFNQMHLSFFRAPMSFFDSTPSGRILNRASADQSTVDMDISDLVWGFTYNLIQLLGSIAVMSQAAWQVFVVLIPVVAACIWYQRYYSASARELARLTGICQAPVIQHFSETISGSTTIRCFEQESRFNEMNMQLIDKYSQPKLYSSSAIEWLNFRLGIKQQFCFCEGIAGLAVTYGISLNAVQFKLIWFLCNLENKIVSVERILQYTSIPSESPLVIKDNQPDHSWPSLGEVHVQDLQVQYAPHLPLVLCGLTCTFTAGAKTGIVGRTGSGKTTLVQALFRLVEPVAGQILIDNINISLIGVHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKESKLDFTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTAMDNIIQQTVKQHFSDCSVITIAHRITSILDSDMVLFLGEGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGR 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05361 1290 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05361 1290 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Vivi3g05361 1290 CDD ABCC_MRP_domain1 429 629 - -
Vivi3g05361 1290 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524|GO:0016887
Vivi3g05361 1290 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05361 1290 FunFam ABC transporter C family member 5 704 1025 - -
Vivi3g05361 1290 Gene3D ABC transporter type 1, transmembrane domain 705 1025 IPR036640 GO:0005524|GO:0016020
Vivi3g05361 1290 Gene3D ABC transporter type 1, transmembrane domain 94 409 IPR036640 GO:0005524|GO:0016020
Vivi3g05361 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 651 IPR027417 -
Vivi3g05361 1290 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 37 1278 - -
Vivi3g05361 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1035 1269 IPR027417 -
Vivi3g05361 1290 SUPERFAMILY ABC transporter transmembrane region 739 1026 IPR036640 GO:0005524|GO:0016020
Vivi3g05361 1290 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Vivi3g05361 1290 FunFam ABC transporter C family member 10 98 411 - -
Vivi3g05361 1290 FunFam ABC transporter C family member 5 414 661 - -
Vivi3g05361 1290 SMART AAA_5 456 629 IPR003593 GO:0016887
Vivi3g05361 1290 SMART AAA_5 1070 1262 IPR003593 GO:0016887
Vivi3g05361 1290 SUPERFAMILY ABC transporter transmembrane region 109 407 IPR036640 GO:0005524|GO:0016020
Vivi3g05361 1290 Pfam ABC transporter transmembrane region 742 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05361 1290 Pfam ABC transporter transmembrane region 115 380 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05361 1290 Pfam ABC transporter 1064 1209 IPR003439 GO:0005524
Vivi3g05361 1290 Gene3D - 410 671 IPR027417 -
Vivi3g05361 1290 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1044 1278 IPR003439 GO:0005524
Vivi3g05361 1290 CDD ABCC_MRP_domain2 1042 1262 - -
Vivi3g05361 1290 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Vivi3g05361 1290 FunFam ABC transporter C family member 3 1027 1279 - -
Vivi3g05361 1290 CDD ABC_6TM_ABCC_D2 740 1019 IPR044726 GO:0140359
Vivi3g05361 1290 Gene3D - 1027 1280 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05361 Vivi-Chr3 109731049 109745209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05361 429 856 Calmodulin-binding Proteins AT2G36910 26.160 1.21e-27 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05361 - K05666 gmx:100795627 2004.18