Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05360 ATGACTAAACATGCTCTTCAAGAGTCCCTTTTGAACGGCAACAGCGATTCTGATTCCAAAAAGTTAGGAGGAAATGAAATTTTAACCAGTTATTCAAAGGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATGACTCCACTAATAACATTGGGGAGTAAAAAGACCTTAAACCATCAAGACCTTCCACTTCTTTCTGCCAATGACACTGCCTATGGAACTTTTTCAACTTTTAGAAAAAATCTTGAATTGGAGTGTGGTAATGTTAGGACTGTGACAACTATGAAGCTCGCCAAGGTGTTGTTTTTATCGACATGGGAAGGGATTCTTATATCTGGTATATTTGCATTCTTGTACGTGTGTGCTACTTATGTAGGACCTTACCTTATTGACAACCTTGTTCAATATCTCAATGATGAAAACAAGGTTAAAAATGAAGGCTATGTTTTGGCAATGGCGTTTATTGCGGCAAAGTTTGTTGAGTGTCTTTCGCAAAGGCACTGGACGTTTAAGTTTCAACAGGTTGGAGTTAGGATGCAAGCAATGTTGGTGTCAATGATCTATGCTAAAGGTTTGACACTTTCTTGTCAATCAAAAGAGGGACATAGCAGTGGCGGAATAATCAACTTAATGACTGTTGATGCGCAAAGGATAGGCGAGTTTTGTTGGTATATGCATGATATATGGATGGCTGTTCTACAAATTTCTTTGGCTTTGTTTATTCTTCATAGAAGTGTCGGGGTTGCATCGGTAGCTGCTTTTGCTGCAACTGTTATTGTGATGTTGCTAAACCTTCCTGTGACTTCCCTGCAAGAGAGGTTCCAAGCTAAGTTAATGGAGTTCAAGGATAAAAGAATGAAGGCGACGTCTGAGGTTCTAATGAACATGAGGATTCTCAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTTAGGAAGTTAGAGGAGACGTGGCTAAAAAAATTTCTTATTGGTAATGCAATTGTTAGATTTCTCTTCTTTAACGCGCCGACATTTGTTGCTGTGGTCACTTTCGGTGCCTGTGTTCTTCTAGGAATTCCACTTGAATCAGGAAAGATCTTATCCGCTCTTGCAACATTCCGAATTCTTCAAATGCCTATCTATAATATTCCTGACACAATTTCAATGATTGCACAAACCAAAGTTTCCCTCGATCGGATTGTCACTTTTCTTCGTCTAGATGATTTGCAGACTGATGTAGTGGAGAAGCTTCCACGAGGTAGTTCTGATATAGCAATTGAAATAGTAGATGGAAATTTCTCTTGGGATTTTTCTTCTGTCAATACAAATTTGAAAAACATAAACCTTAGAGTTTTTCATAGTATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCGAGTTTACTTTCTTGTATAATAGGTGAAATACCAAAGGTATCTGGTAACTTGAAGGTGTGTGGAACAAAAGCTTATGTTGCTCAATCACCATGGATACAGAGTGGAAAGATAGAAGAGAATATACTGTTTGGGAGAGAGATGGACAGGGAAAAGTATGAGAAGGTGCTCGAAGCATGTTCGTTGAAGAAAGACCTAGAGGTTCTACCTTTTGGTGATCAGACCATTATTGGAGAGAAGGGAATTAACTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCGAGGGCACTTTACCAAGATGCCGATATATATCTTCTCGATGATCCCTTTAGTGCTGTTGATGCTCATACAGGATCCCATATCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACAGTGATATACATAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTGATACTTGTCATGAAAGAAGGAAGAATAACTCAATCAGGAAAATACAATGATATTCTTACGTCAGGAACTGATTTTATGGAACTTGTAGGCGCACATAGAGCAGCGTTGTCTTCAGTTAAGTCTTTAGAGAGAAGGCCTACATTTAAAACATCGAGTATAACCGGAGAAGACACAGGTTCATTAAGTGATTTTGAACTTGAGCAAGAAATCGAAATAGTAGATGATCAAAATGGCAAGTTAGATGAAACAATTGTGCCGAAAGGCCAACTTGTTCAAGACGAAGAACGTGAAAAGGGTAGTATTGGGTTTAAAGTGTTTTGGAAATACATAACAATAGCTTATGGAGGAGCTCTTGTACCTTTCCTATTTCTTTCACAGATACTCACTGTGGTTTTACAAATTGCAAGCAACTACTGGATGGCTTTGGCAACTCCTGTTTCTGCAACTGATGAACCTGATATTGGAAACCTTACTCTGATGGTTGTCTATGTTTCTTTGGCTATTGGAAGTTCCTTTGGCACCCTTGGCAGAGCCGTTCTTGCTGCGATAGCTGGATACAAGACCGCCACCATGCTCTTCAATCAAATGCATCTGAGCTTCATTCGAGCGCCAATGTCATTTTTTGATTCAACCCCAAGTGGAAGAATTCTTAATAGAGCTTCGTCTGACCAAAGTACAGTAGATACGGACATTTCAAATCTAGCATGGGGTTTCACCTACAATATGGTTCAGCTATTGGGAATTATTGCTGTGATGTCTCAAGCAGCATGGCAAGTGTTCATAATATTGATTCCTGTCATGGCAGCTTGCATTTGGTACCAGCGATACTATTCAGCATCAGCACGAGAATTGGCACGATTAACTGGTGTATGCCAAGCACCTGTTATACAACATTTTTCTGAAACGATATCCGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTACTGAATTGAATATGCAATTGATAGACAAGTATTCCCAACCTAAGTTATACAGTGCTAGTGCAATGGAATGGTTGAGTTTCAGATTGGATCTTTTATCCTCTACCATATTTGCCTTCTGCTTGGTTTTCTTGGTATCTTTTCCAAGTTCAATTGCTGATCCTAGTATTGCGGGATTGGCTGTTACATACGGGATTAGTCTAAATGCTATACAAACTAATTTAATTTGGTTTCTTTGCAATTTGGAGAATAAAATTATATCTGTAGAAAGAATACTTCAGTACACTTCCATCCCAAGTGAAGCACCTCTTGTAATAAAAGACAATCAACCAGATCTTTCTTGGCCATCATCTGGAGAGGTTCAAATCCAGGATTTACAGGTTCAATATGCTCCTCACTTGTCTCTTGTTTTACGTGGACTAAAATGCACTTTCACCGCTGGAGCGAAAACTGGCATTGTTGGAAGAACTGGAAGTGGAAAATCAACACTTGTGCAAGCACTTTTCAGACTTGTTGAGCCTGTCGCCGGAAAAATATTGATAGATAACATCAACATCTCGTTGATTGGAATCCATGATTTACGGTCCAGACTCAGCATAATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAGTAATCTCGACCCGCTGGAAGAGTACACAGATGAACAAATTTGGGAGGCTTTAGATATGTGCCAACTAGGAGATGAAGTGAGAAAGAAAGAAGGAAAGCTCGACTCAACAGTTACTGAGAATGGAGAAAACTGGAGCATGGGTCAAAGACAGTTGGTTTGCCTCGGCCGTGTTTTACTTAAGAAAAGCAAGATATTAGTGCTTGACGAAGCAACTGCATCAGTTGATACAGCAACAGATAATATTATTCAGCAGACAGTTAAGCAATATTTCTCTGATTGCACAGTCATTACCATTGCTCATAGAATAACTTCAATCCTCGATAGCGACATGGTTTTATTTCTCAGTGAAGGACTTATTGAGGAATATGATTCACCAAAGAAGTTGCTTAAGGACAAATCTTCATCTCTTGCTCAACTGGTTGCAGAATACACAAGGAGATCAAACACTGGTTTTGGAAGTTGA 3903 0.3923 MTKHALQESLLNGNSDSDSKKLGGNEILTSYSKAGFFSILTFSWMTPLITLGSKKTLNHQDLPLLSANDTAYGTFSTFRKNLELECGNVRTVTTMKLAKVLFLSTWEGILISGIFAFLYVCATYVGPYLIDNLVQYLNDENKVKNEGYVLAMAFIAAKFVECLSQRHWTFKFQQVGVRMQAMLVSMIYAKGLTLSCQSKEGHSSGGIINLMTVDAQRIGEFCWYMHDIWMAVLQISLALFILHRSVGVASVAAFAATVIVMLLNLPVTSLQERFQAKLMEFKDKRMKATSEVLMNMRILKLQAWEMKFLSKIIQLRKLEETWLKKFLIGNAIVRFLFFNAPTFVAVVTFGACVLLGIPLESGKILSALATFRILQMPIYNIPDTISMIAQTKVSLDRIVTFLRLDDLQTDVVEKLPRGSSDIAIEIVDGNFSWDFSSVNTNLKNINLRVFHSMRVAVCGTVGSGKSSLLSCIIGEIPKVSGNLKVCGTKAYVAQSPWIQSGKIEENILFGREMDREKYEKVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHIFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILTSGTDFMELVGAHRAALSSVKSLERRPTFKTSSITGEDTGSLSDFELEQEIEIVDDQNGKLDETIVPKGQLVQDEEREKGSIGFKVFWKYITIAYGGALVPFLFLSQILTVVLQIASNYWMALATPVSATDEPDIGNLTLMVVYVSLAIGSSFGTLGRAVLAAIAGYKTATMLFNQMHLSFIRAPMSFFDSTPSGRILNRASSDQSTVDTDISNLAWGFTYNMVQLLGIIAVMSQAAWQVFIILIPVMAACIWYQRYYSASARELARLTGVCQAPVIQHFSETISGSTTIRSFEQESRFTELNMQLIDKYSQPKLYSASAMEWLSFRLDLLSSTIFAFCLVFLVSFPSSIADPSIAGLAVTYGISLNAIQTNLIWFLCNLENKIISVERILQYTSIPSEAPLVIKDNQPDLSWPSSGEVQIQDLQVQYAPHLSLVLRGLKCTFTAGAKTGIVGRTGSGKSTLVQALFRLVEPVAGKILIDNINISLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQYFSDCTVITIAHRITSILDSDMVLFLSEGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGS 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05360 1300 SMART AAA_5 451 624 IPR003593 GO:0016887
Vivi3g05360 1300 SMART AAA_5 1080 1272 IPR003593 GO:0016887
Vivi3g05360 1300 CDD ABCC_MRP_domain2 1052 1272 - -
Vivi3g05360 1300 FunFam ABC transporter C family member 5 699 1035 - -
Vivi3g05360 1300 CDD ABCC_MRP_domain1 424 624 - -
Vivi3g05360 1300 SUPERFAMILY ABC transporter transmembrane region 107 403 IPR036640 GO:0005524|GO:0016020
Vivi3g05360 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 424 647 IPR003439 GO:0005524
Vivi3g05360 1300 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1054 1288 IPR003439 GO:0005524
Vivi3g05360 1300 Gene3D ABC transporter type 1, transmembrane domain 700 1035 IPR036640 GO:0005524|GO:0016020
Vivi3g05360 1300 FunFam ABC transporter C family member 3 1037 1289 - -
Vivi3g05360 1300 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 31 1288 - -
Vivi3g05360 1300 FunFam ABC transporter C family member 5 409 656 - -
Vivi3g05360 1300 Gene3D - 1037 1290 IPR027417 -
Vivi3g05360 1300 Pfam ABC transporter 1072 1219 IPR003439 GO:0005524
Vivi3g05360 1300 Gene3D ABC transporter type 1, transmembrane domain 90 406 IPR036640 GO:0005524|GO:0016020
Vivi3g05360 1300 Pfam ABC transporter 442 576 IPR003439 GO:0005524
Vivi3g05360 1300 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 737 1017 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05360 1300 CDD ABC_6TM_ABCC_D2 735 1029 IPR044726 GO:0140359
Vivi3g05360 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 646 IPR027417 -
Vivi3g05360 1300 FunFam ABC transporter C family member 10 93 406 - -
Vivi3g05360 1300 Pfam ABC transporter transmembrane region 110 377 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05360 1300 Pfam ABC transporter transmembrane region 737 981 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05360 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1045 1279 IPR027417 -
Vivi3g05360 1300 ProSitePatterns ABC transporters family signature. 549 563 IPR017871 GO:0005524|GO:0016887
Vivi3g05360 1300 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 110 390 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05360 1300 CDD ABC_6TM_ABCC_D1 111 398 IPR044746 GO:0140359
Vivi3g05360 1300 SUPERFAMILY ABC transporter transmembrane region 734 1036 IPR036640 GO:0005524|GO:0016020
Vivi3g05360 1300 Gene3D - 407 665 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05360 Vivi-Chr3 109706638 109719821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05360 424 670 Calmodulin-binding Proteins AT2G36910 28.839 9.29e-26 114