Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05352 ATGACTAAACATGCTCTTGAAGAGTCCCTTTTGAATGGTGAAGCTAGTGTAACCAACAACAGTTCTGATTCCAAAAAAGCAGGTGGTAATGAAATTTTAACAAGTTATTTGAATGCTGGATTTTTTAGCATTCTTACTTTCTCATGGATGACTCCACTTATAACATTAGGGAGTAAAAAGACTTTAAATCATCAAGACCTTCCACTTCTTTCTACTAATGACACTGCCTATGAAACTTTTTCTAATTTTACAAAAAAGCTTGAGTTGGAGTGTGGTAATGTTAGAACTGTGACCACTATTAAACTCGCCAAGGTGCTGTTTTTATCAACATGGGAAGGGATTCTTATATCTGGCATATTTGCATTCTTTTACGTATGTGCTACTTATGTAGGACCTTACCTTATTGACAACCTTGTTCAATATCTCAATGATGAAAACAAGGTTAAAAATGAAGGCTATATTTTGGCTACAACGTTTGTTGCAGCAAAGCTTGTTGAGTGTATTTCGCAAAAGCACTCAATGTTTAGGTACCAACAGGTTGGTGTTAGGATTCAATCAATGTTGGTGTCAATGATCTATGCTAAAGGATTGACCCTTTCGTGTCAATCAAAAGAGTCACATAGCAGTGGTGAAATCATCAACTTAATGACTGTTGATGCTCAAAGGATAGCTGAGTTTTGTCGGTATATGCATGATCCATGGATGGCTATTCTACAAGTTTCTTTGGCTTTGTTTATTCTTCATAGAAATGTCGGGGTTGCTTCAGTGGCTGCTTTTGCTGCAACTGTTACTGTGATGTTGCTAAACCTTCCTATAACTTCACTGCAAGAGAGATTCCAAGCTAAGTTAATGGAGTTCAAGGATAAAAGAATGAAGGCGACGTCTGAGGTTCTAATGAACATGAGGATTCTTAAACTTCAAGCGTGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTTAGGAAGTTAGAGGAGATATGGCTAAAGAAATTTCTTGTTGTTACCGCAATTGTTAGATTTCTCTTCTTTAGCGCCCCGACATTTGTTGCTGTCGTTACTTTCGGTGCTTGTGCTCTTTTAGGCATTCCACTTGAAACAGGAAAGATCTTATCTGCTCTTGCAACATTCAGAATTCTTCAAATGCCTATCTATAATATTCCTGACACAATTTCAGTGATTGCACAAACCAAGGTTTCCCTCGATAGGGTTGTTGCTTTTCTTCGTCTAGATGATTTGCAGACTGATGTGGTGGAGAAGGTTCCGCGAGGTAGTTCTAATATGGCAATTGAAATAGTTAATGGAAATTTCTCTTGGGATTTATCTTCTGTCAATGCAACGTTGAAAAACATAAATCTTAGAGTTTTTCATAGTATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCGAGTTTACTTTCTTGTATAATAGGTGAAATACCAAAGATATCTGGTAACTTGAAGGTGTGTGGAACAAAGGCCTATGTCGCTCAATCACCATGGATACAGAGTGGAAAGATAGAAGAGAACATACTATTTGGGAGAGAGATGGATAGGGAAAAGTATGAAAAGGTGCTTGAAGCATGTTCCTTGAAGAAAGACCTAGAGATTTTACCGTTTGGTGATCAGACCTTTATTGGAGAAAAAGGAATCAATTTGAGTGGGGGACAGAAGCAAAGAGTACAAATAGCGCGTGCTCTTTACCAAGATGCCGATATATATCTTCTAGACGATCCCTTTAGTGCTGTTGATGCTCATACAGGATCCCACCTCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACCAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCCGACGCTGATCTGATACTTGTCATGAAAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTTACTTCAGGAACCGATTTTATGGAACTTGTAGGCGCACATAGAAACGCACTGTCTTCAGTTAAGTCTTTAGAGAGAAGGCCTACATTTAAAACATTGAGTATTGCTGGAGAAGACACAGGTACATTAAGCGATTATGAACTTGAGCAAGAAGTGGAAAATATAGATGATCGAAACGGCAAGCTAGATGAAACAAATATACCAAAAGGCCAACTTGTTCAAGATGAAGAACGTGAAAAGGGTAGTGTTGGGTTGAAAGTGTTCTGGAAATACATAACAACAGCTTATGGAGGAGCTCTTGTACCTTTCCTATTTCTTTCACACATAGTCACTGTGGTTTTACAAATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGCAGAGCCTGGTATTGGAAACTTTACTCTGATGGTTGTATATGTTTCTTTGGCCATTGGAATTTCCTTTTCCACCCTTGTCAGAGCATTTCTTGCTGCGATAGTTGGATACAAGACCGCCACCATGCTCTTCAATCAAATGCATTTTAGCTTCATTCGAGCGCCAATGTCATTTTTTGACTCCACCCCAAGTGGAAGAATTCTTAATAGAGCTTCAGCAGACCAAAGTACAGTAGATATGAACATTTCAAATCTAGTATGGGGATTAACCTACAATCTGGTTCAGCTTGTGGGAAATATTGCCGTGATGTCTCAAGCTGCATGGCAGGTGTTGGTAGTATTGATTCCTGTCGCGGCAGCTTGCATATGGTACCAGCGATACTACTCAGCATCAGCTCGGGAATTGGCACGATTAACTGGTATATGCCAAGCGCCAGTTATACAGCATTTTTCTGAAACGATATCCGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGAAATGAATATGCAATTGATAGACAAATATTCCCAACCTAAATTATACAGTGCTAGTGCAATGGAATGGTTGAGTTTCAGATTGGATCTTTTATCCTCTACCATATTTGCTTTCTGCTTGATTTTCTTGGTGTCCTTTCCAAGTTCAATAGCTGATCCTAGCATTGCGGGATTGGCTGTGACATATGGGATTAATCTAAATGCTGTACAATTCAAATTAATTAGGTTTCTTTGCAATTTGGAGAACAAAATTATATCGGTAGAACGAATACTTCAGTACACCTCCATCCCAAGTGAAGCACCTCTTGTAATAAAAGACAATCAACCAGATCATTCTTGGCCATCATTGGGAGAGGTTCAAGTCCAGGATTTACAGGTTCAATATGCCCCTCACTTGCCTCTTGTTTTACATGGACTTACATGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAAACAACCTTAGTGCAAGCACTTTTTAGACTTGTTGAGCCTGTTGCAGGACAAATATTGATAGATAACATCAACATCTCATTGATTGGAGTCCATGATTTACGGTCCAGACTAAGCATAATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAGTAACCTCGACCCGCTGGAAGAGTACACAGATGACCAAATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTGAGAAAGAAAGAAAGAAAGCTTGACTCCACAGATTGA 3570 0.3905 MTKHALEESLLNGEASVTNNSSDSKKAGGNEILTSYLNAGFFSILTFSWMTPLITLGSKKTLNHQDLPLLSTNDTAYETFSNFTKKLELECGNVRTVTTIKLAKVLFLSTWEGILISGIFAFFYVCATYVGPYLIDNLVQYLNDENKVKNEGYILATTFVAAKLVECISQKHSMFRYQQVGVRIQSMLVSMIYAKGLTLSCQSKESHSSGEIINLMTVDAQRIAEFCRYMHDPWMAILQVSLALFILHRNVGVASVAAFAATVTVMLLNLPITSLQERFQAKLMEFKDKRMKATSEVLMNMRILKLQAWEMKFLSKIIQLRKLEEIWLKKFLVVTAIVRFLFFSAPTFVAVVTFGACALLGIPLETGKILSALATFRILQMPIYNIPDTISVIAQTKVSLDRVVAFLRLDDLQTDVVEKVPRGSSNMAIEIVNGNFSWDLSSVNATLKNINLRVFHSMRVAVCGTVGSGKSSLLSCIIGEIPKISGNLKVCGTKAYVAQSPWIQSGKIEENILFGREMDREKYEKVLEACSLKKDLEILPFGDQTFIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILTSGTDFMELVGAHRNALSSVKSLERRPTFKTLSIAGEDTGTLSDYELEQEVENIDDRNGKLDETNIPKGQLVQDEEREKGSVGLKVFWKYITTAYGGALVPFLFLSHIVTVVLQIASNYWMALATPVSATAEPGIGNFTLMVVYVSLAIGISFSTLVRAFLAAIVGYKTATMLFNQMHFSFIRAPMSFFDSTPSGRILNRASADQSTVDMNISNLVWGLTYNLVQLVGNIAVMSQAAWQVLVVLIPVAAACIWYQRYYSASARELARLTGICQAPVIQHFSETISGSTTIRSFEQESRFNEMNMQLIDKYSQPKLYSASAMEWLSFRLDLLSSTIFAFCLIFLVSFPSSIADPSIAGLAVTYGINLNAVQFKLIRFLCNLENKIISVERILQYTSIPSEAPLVIKDNQPDHSWPSLGEVQVQDLQVQYAPHLPLVLHGLTCTFTAGAKTGIVGRTGSGKTTLVQALFRLVEPVAGQILIDNINISLIGVHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDDQIWEALDMCQLGDEVRKKERKLDSTD 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05352 1189 FunFam ABC transporter C family member 10 98 411 - -
Vivi3g05352 1189 SUPERFAMILY ABC transporter transmembrane region 112 407 IPR036640 GO:0005524|GO:0016020
Vivi3g05352 1189 CDD ABC_6TM_ABCC_D2 740 1034 IPR044726 GO:0140359
Vivi3g05352 1189 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 1022 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05352 1189 CDD ABCC_MRP_domain1 429 629 - -
Vivi3g05352 1189 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Vivi3g05352 1189 Gene3D - 409 670 IPR027417 -
Vivi3g05352 1189 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05352 1189 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524|GO:0016887
Vivi3g05352 1189 SUPERFAMILY ABC transporter transmembrane region 739 1041 IPR036640 GO:0005524|GO:0016020
Vivi3g05352 1189 FunFam ABC transporter C family member 5 703 1040 - -
Vivi3g05352 1189 FunFam ABC transporter C family member 5 414 661 - -
Vivi3g05352 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1050 1186 IPR027417 -
Vivi3g05352 1189 Gene3D ABC transporter type 1, transmembrane domain 704 1040 IPR036640 GO:0005524|GO:0016020
Vivi3g05352 1189 SMART AAA_5 1085 1189 IPR003593 GO:0016887
Vivi3g05352 1189 SMART AAA_5 456 629 IPR003593 GO:0016887
Vivi3g05352 1189 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Vivi3g05352 1189 Gene3D ABC transporter type 1, transmembrane domain 94 408 IPR036640 GO:0005524|GO:0016020
Vivi3g05352 1189 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 1172 - -
Vivi3g05352 1189 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Vivi3g05352 1189 Pfam ABC transporter 1076 1176 IPR003439 GO:0005524
Vivi3g05352 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 651 IPR027417 -
Vivi3g05352 1189 FunFam ATP-dependent bile acid permease, putative 1043 1188 - -
Vivi3g05352 1189 Pfam ABC transporter transmembrane region 742 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05352 1189 Pfam ABC transporter transmembrane region 115 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi3g05352 1189 Gene3D - 1042 1188 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05352 Vivi-Chr3 109614165 109621921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05352 410 645 Calmodulin-binding Proteins AT2G36910 30.952 8.72e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05352 - K05666 gmx:106794105 1834.69