Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05328 ATGGCTCTACTAGTCCTCTACTCTGCATATCTTTTCTCCTTTGTTCTCTTAGTCCTTATAGTACAAAAGATAACAAAGAAAAACTATTCGATTCATAACTTACCGCGAGGACCTAGAAAACTACCGATCATAGGAAATATACACAATCTGTTAAGATCTACACCACATCGAAGATTAAGAGATTTGGCCGACAAATACGGACCTGTGATGCATCTTCAACTTGGAGAGGTTTCTACTATTGTCATTTCATCGCCGGAGTTTGCCAAAGAGGTGATGAAAACCCATGATATTAACTTTGCAACAAGGCCTCAAATCCTTGCTACAGAAATAATGTCTTACAATTCTACAAATATAGCTTTTGCTCCTTATGGTAGTTACTGGAGACAGTTACGAAAAATATGCACATCGGAACTTTTAAGCCTAAAACGAGTAAACTCGTATCAATCAATTAGAGATGACGTGCTTTCCGATCTTGTCAAATGGATTGCTTCAGAGAATGGATTACCAATCAATCTAACTGAAGCTGTAATTTCTTCAATATACACTATTGTTTCGAGGGCCGCCTTTGGCGATAAATGCAAAGAGCAAGAAGAATTTATATCTGTGGCAAAACAATCAATCAAGGTTGCAGGAGGTTTTGACTTGGGAGATTTGTTTCCTTCTGCTAAATGGATACAACTTGTTACTGGTTTGAGGCCTAAGCTTGAGAGGTTTCATCGACAAACTGATCAGATATTTGAAAACATTATCAATGAGCATAAAGGGGAAAAGTACAGAAAATCGAAAGGCGATCAAGGTGATGATGTAGAAGAAGATCTGATAGACGTTCTTTTAAAATACGAGGATGGTAGCAACAAGGATTTTTCCTTAACAAAAAACAACATCAAGGCTATAATCCTAGATGTTTTTGGTGCTGGAGGCGAGACATCAGCAAGCACCATAGATTGGGCAATGGCAGAAATGATAAGGGATCCAAGAATAATGAAGAAAGCACAAGCTGAGCTAAGAGAGGTTTTCAAAATGAAAGGAAGGGTTGATGAAAATTGCCTCAATGAACTCAACTATTTGAAATCAGTAGTGAAAGAAACATTAAGGCTACACCCTCCAGCACCTCTTTTGCTACCAAGAGAATGTGGTGATGCCTGTGAGATAAACGGGTTTCACATACCGATTAAGACTAAGGTGATAATCAATGCTTGGGCTATTGCAAGAGATCAAAACTACTGGACTGAGCCAGAAAGGTTTTATCCAGAGAGATTCATTGACAGCGCTATTGACTATAAAGGGAGTAATTTTGAGTACATTCCTTTTGGTGCCGGAAGAAGAATATGCCCGGGGATCACATTTGGTTTGAGAAATGTTGACCTTACCCTTGCAATGTTGTTGTATCATTTTGACTGGAAGCTTCCCAGTGGAAACAAAGGTGAAGAATTGGACATGACTGAGCAATTTGGACTCACTGTGAGAAGAAAAGACGATCTTTTTTTGTTACCTTCTGTTTATCATCCTTTGAATGTCACATGA 1524 0.3858 MALLVLYSAYLFSFVLLVLIVQKITKKNYSIHNLPRGPRKLPIIGNIHNLLRSTPHRRLRDLADKYGPVMHLQLGEVSTIVISSPEFAKEVMKTHDINFATRPQILATEIMSYNSTNIAFAPYGSYWRQLRKICTSELLSLKRVNSYQSIRDDVLSDLVKWIASENGLPINLTEAVISSIYTIVSRAAFGDKCKEQEEFISVAKQSIKVAGGFDLGDLFPSAKWIQLVTGLRPKLERFHRQTDQIFENIINEHKGEKYRKSKGDQGDDVEEDLIDVLLKYEDGSNKDFSLTKNNIKAIILDVFGAGGETSASTIDWAMAEMIRDPRIMKKAQAELREVFKMKGRVDENCLNELNYLKSVVKETLRLHPPAPLLLPRECGDACEINGFHIPIKTKVIINAWAIARDQNYWTEPERFYPERFIDSAIDYKGSNFEYIPFGAGRRICPGITFGLRNVDLTLAMLLYHFDWKLPSGNKGEELDMTEQFGLTVRRKDDLFLLPSVYHPLNVT 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05328 507 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PRINTS E-class P450 group I signature 398 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PANTHER OS08G0105600 PROTEIN 58 503 - -
Vivi3g05328 507 SUPERFAMILY Cytochrome P450 35 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 Pfam Cytochrome P450 35 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 CDD CYP71-like 65 494 - -
Vivi3g05328 507 Gene3D Cytochrome P450 28 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vivi3g05328 507 FunFam Cytochrome P450 71D8 27 498 - -
Vivi3g05328 507 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05328 Vivi-Chr3 108980119 108981914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05328 9 501 Cytochrome P450 AT3G26300 41.782 4.10e-138 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05328 - - tpra:123912942 827.394