Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05305 ATGTCAAGGCCATCTATTATGATTGGCGACTTGATACCCGAACAAAACTTATGGAAAATTGTTGTTCGTGTTGTCGATGTTTGGACAGTCAAGGAACGTAATGGTCAGCAACACATCGAAGCGGTTATCCAAGATGCAAACTGGCTCAACAACCGTATTGGGAGAAAGAACTATAGACAAGTTTTCAGCCTGATGGTTGTTGTTATGCTCTTGCTGTGGCTATCAGCTGATTTGTCAAAACCAGAAAAAGTTTTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGAAATTCCGTAGTTGGAACTGTGGAAAAACGAAGGATCTCTGGAGGACAAAGGAAGCGTGTAAATGTTGGATTGGAAATGATTATGGAACCTTCACTTTTGATGTTAGACGAGCCAACATCTGGCCTAGATAGTGCATCATCTCAACTTCTTCTAAGAGCATTAAGACATGAAGCTCTTGAGGGAGTGAATGTTTGCATGGTGGTTCACCAACCTACGTCTCAGGATCATTGTTCTGGAGCGGATATAATCAATGGTTCTTTCAATAATTACAAATATGCAACTGTGGAGCATTGTGTTGCACAACAACAGACAACGAATATAATTCTCTTCTATATCAGCTAG 642 0.405 MSRPSIMIGDLIPEQNLWKIVVRVVDVWTVKERNGQQHIEAVIQDANWLNNRIGRKNYRQVFSLMVVVMLLLWLSADLSKPEKVLVVERVIEFLGLQSVRNSVVGTVEKRRISGGQRKRVNVGLEMIMEPSLLMLDEPTSGLDSASSQLLLRALRHEALEGVNVCMVVHQPTSQDHCSGADIINGSFNNYKYATVEHCVAQQQTTNIILFYIS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05305 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 177 IPR027417 -
Vivi3g05305 213 ProSitePatterns ABC transporters family signature. 112 126 IPR017871 GO:0005524|GO:0016887
Vivi3g05305 213 Gene3D - 9 204 IPR027417 -
Vivi3g05305 213 Pfam ABC transporter 32 140 IPR003439 GO:0005524
Vivi3g05305 213 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 70 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05305 Vivi-Chr3 108202147 108204051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05305 111 154 Calmodulin-binding Proteins AT2G36910 45.455 1.31e-06 46.6