Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g05298 ATGGCTGGGCAGAAACGGAGCAACGCTTTTGATTCTTTGTCTATACTTTCTTCTTCTGCGGCGTCTTTGAAAAAATATGATGTTTTTCTTAGCTTTCGAGGTGAGGATACTCGCAGAAACATCACAACCCATCTTTATGATGCTTTAAGTCGAAAGAAAGTTGAAACCTTTATTGACAACAATGAGCTTAAAAAAGGAGATGAGATTTCTCCAACACTCATCAAAGCCATTGAGGAGTCACATCTATCTATTGTCATCTTCTCAGAAAACTATGCCTCCTCAAAGTGGTGCTTGAATGAGCTCAAAAAGATTCTAGAATGCAAGAGATATAAGAAGCAGATTGTGATACCTGTTTTTTACAACATAGATCCGTCACACGTGAGGAACCAGACTGGGATTTACAAGCAAGCCTTTGAAAAACATAAGCGAGAATTGAAGCACAATTATGACAGGTTGAAGATATGGAAAGCTGCTCTCACTGAGGCAGCTAGTTTAGTTGGTTGGGACTTTCAAAATTACAGGACTGAATCAGACTTCATTAAGGACATTGTCAAAGATGCTTTGCTGAAACTGAATCTTAAGTACCAACATGAAATTAAGGGGCTTGTTGGAATTGAGAAGAATTATGAACAAATTGAATCAATGCTGAAAATTGGGTCTAATGAAGTTATAGTTCTTGGAATATGGGGCATGGGTGGCATAGGAAAGACAACCCTTGCTAAGGCTTTATATGCCAAACTGCATTCCCAATTCGAAGGTTGTTGCTTCCTCAATGTAATGGATGAGTCAAACAAGTATGGACTTGATGGCGTACACTCTAAATTTTTTTCTACATTGTTAGAGGAAGAAAATCTTCATCCTGATGCATCCTACATAGAATCCCGTTTTTCCATGAGAAGGATTGCCCGTAAAAAAGTTTTCATTGTGTTGGATGGCGTGGAAACCTTAGAGAAAATAGAAGATCTTATCCTAGAAATTGATGGGTTGGGACCAGGTAGCAGGGTAGTTGTTACAACTAGAGATAAGCACATATTTAGTCTGTTTAGTAAATGTGAAATATATGAGGTTCAGGTATTAAACAAACACGATTCTCTTCAGCTATTCAGTTTGACAGTCTTCGGACAAAAACATCCTGAAATTGGATATGAAGATCTATCAGAAAGGGTAATCGACTATTGCAAAGGCAATCCTCTGGCTTTAAAAGTTATAGGTGCAAATCTCCGTTCAAGAAGTAATGAAGCATGGGTAAATGAATTGAAAAAGCTGGAAAAGATTCCCAATAAGAAGATTTGCGATGTGTTAAAATTGAGTTTTGATGACTTAGATCGCTGTCAAAAAGCCATATTTCTAGACATCGCATGCTTTTTGAGAGAAGAGAGTAAATATTTTGTAATAGAATTATTGGAAGCTTGTGAGTTGTTTGCAATAAGTGGGATAGAAGTCCTTCTAAATAAATCTCTCATACAAATAAAACTAATTTGGCTAAGGCTTAGCAATTCGGAAGTTGATGGTTTAGAAATGCATGATTTGTTACAAAAAATGGGACGGGATATTGTTAATCAAGAATCTAAAGATCCTGGAAAACGAAGTCGATTGTGGAAAGCCGAAGAAATATGTGATGTATTGAAAAAAAACAAGGGAACAGAAGCTGTGGAAGCTATAACATTTGATAGAACAGAAGTTGGGGATCTTTACTTAAAGTCTGACTCCTTTAAAAGGATGACAAACTTAAGATATCTTGAAATCTATAATGGATCTAATGGTAGAGCATGCAATGTGTACTTTCCCGATGGTCTCGAGTGGCTTTCTGATAAATTAAGGTACTTTCGATGGGATGCTTACTGCCTTGAGTCTTTGCCAACAACCTTTTGTGCTGAAATGCTTCTAGAGCTCAACCTGACACGTAGCAAGCTTAAAAGACTATGGGATGGAGTTCAGAATCTTGTGAATTTAAAGATAATGATGCTTGAATTCTCCTACGATCTGATTGAGATCCCAGATTTATCGAGGGCTACAAATCTTGAAAGACTATATCTCTATAGTTGTGAAAGCCTGTGTCAGCTCCATCCATCCATCTTATGTCTCCCCCGACTTGAACATCTAGATTTAAGAAGTTGCATAAAGATTGAAAGCCTTAAAACCAACTTTCATTCAAAATCCCTCTATAATCTCTTACTCAAGGGTTGTTCATCTCTCACAGAATTTTCGGTGACATCCGAGGCAATGAGACATTTATCCTTAAATGGCACCGCTATACATGAATTGTCTTCATCGATTTGGCGTAATACCAAGCTTACAATTCTTGACCTAACTGAATGTAACAAGCTTAACATTGTTGGGAGTAAGTTATCAAATGATCATGGACTCGGGTCTGTTAGAGATCTAGACCTTTCTGGGTGCACAGAAATCAATGCATTAAATCTTCTGTTCATCCTTGATGGCATATGGTCTTTAAATCGACTAAAAATGAATGAGTGTTGCAACTTAGAAGGTCTCCCTGAGAACATCAAAAAGCATTCAAGGCTGAACTGGCTTGAATTAAATAATTGCAGGAAACTTGTGTCTCTAGCAGAGCTTCCGCCATCCCTGCTATATTTGAAAGCCATTAATTGCACTTATCTGGACACAAACTCCTCCCAACAGTCATTGCTTGAGAACATGGTACAAACATTCTCTGGCGACCCTCTCCATGTAGATGAAGGTGATAATCATTTATCTTTTTTGCCAGGAGCACAAGTACCGTGCCAGTTTGATTTTCAGACAACCGAGGCTTCAATAACTATTCCTCCCATTCCAAAATCTGACCTGCGTGGTTTCATATTTTGTGTCATTCTATCCGAGGGATTTCATGCTCTCCTTCATTCTCTTGGTTCCCTTCATTGTATCATCTTTGAACACGACAAAGAAGTCGACAGGCGTCATATTTTTCTCAATCATCTCGGGACATTAATTTCAGATCATGTATTGATATGTTGGCAGTATTACAACAGACAAGAAAGTGGAAGTTATGCATTTTGCAACCTATCATTTCGATTCGTATTTCTAGGTCAGAAGGACCAAATGTGGTGGTCAACGGAGGGAATAAAAGGGTGCGGCGTCTTACCTGTATATTCCTTAAAACATAAGTTGGAGGTGGATGGTGGTAGTAGTGTTACTAACAACATTGTTGATTTAAAATTAAAATCCACTGTTCAAGACTCCGATGACTCTGATTGCAATATGAAAAATGAGATTAAAGTCAGAAGCTCTAACAATGAAAAGGCTATTAAACATGTATATGTTAGAAGAGGAAAAAGGCCACGTTATGTTAGTAGACCTCCTATCAAAGATGACTCTGATTTTAATTTACAAAATGAGATTGAAGTCAGAAGCTCTAAAAATAAAAATGAAGATGATCAAGAACAACCTTCTTGTTCTCGCAAAGAAGGAACAACCTTCTTCAATAGAAAAAAGGCCCGTACAGTGGACAGGTCGGACAGGTCTGTTGCCGAGGTCAACAAAATAATACAAATTAGAAATGATTTGCGGCACTTGATGAGGTCAACAAGATAA 3552 0.3775 MAGQKRSNAFDSLSILSSSAASLKKYDVFLSFRGEDTRRNITTHLYDALSRKKVETFIDNNELKKGDEISPTLIKAIEESHLSIVIFSENYASSKWCLNELKKILECKRYKKQIVIPVFYNIDPSHVRNQTGIYKQAFEKHKRELKHNYDRLKIWKAALTEAASLVGWDFQNYRTESDFIKDIVKDALLKLNLKYQHEIKGLVGIEKNYEQIESMLKIGSNEVIVLGIWGMGGIGKTTLAKALYAKLHSQFEGCCFLNVMDESNKYGLDGVHSKFFSTLLEEENLHPDASYIESRFSMRRIARKKVFIVLDGVETLEKIEDLILEIDGLGPGSRVVVTTRDKHIFSLFSKCEIYEVQVLNKHDSLQLFSLTVFGQKHPEIGYEDLSERVIDYCKGNPLALKVIGANLRSRSNEAWVNELKKLEKIPNKKICDVLKLSFDDLDRCQKAIFLDIACFLREESKYFVIELLEACELFAISGIEVLLNKSLIQIKLIWLRLSNSEVDGLEMHDLLQKMGRDIVNQESKDPGKRSRLWKAEEICDVLKKNKGTEAVEAITFDRTEVGDLYLKSDSFKRMTNLRYLEIYNGSNGRACNVYFPDGLEWLSDKLRYFRWDAYCLESLPTTFCAEMLLELNLTRSKLKRLWDGVQNLVNLKIMMLEFSYDLIEIPDLSRATNLERLYLYSCESLCQLHPSILCLPRLEHLDLRSCIKIESLKTNFHSKSLYNLLLKGCSSLTEFSVTSEAMRHLSLNGTAIHELSSSIWRNTKLTILDLTECNKLNIVGSKLSNDHGLGSVRDLDLSGCTEINALNLLFILDGIWSLNRLKMNECCNLEGLPENIKKHSRLNWLELNNCRKLVSLAELPPSLLYLKAINCTYLDTNSSQQSLLENMVQTFSGDPLHVDEGDNHLSFLPGAQVPCQFDFQTTEASITIPPIPKSDLRGFIFCVILSEGFHALLHSLGSLHCIIFEHDKEVDRRHIFLNHLGTLISDHVLICWQYYNRQESGSYAFCNLSFRFVFLGQKDQMWWSTEGIKGCGVLPVYSLKHKLEVDGGSSVTNNIVDLKLKSTVQDSDDSDCNMKNEIKVRSSNNEKAIKHVYVRRGKRPRYVSRPPIKDDSDFNLQNEIEVRSSKNKNEDDQEQPSCSRKEGTTFFNRKKARTVDRSDRSVAEVNKIIQIRNDLRHLMRSTR 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g05298 1183 ProSiteProfiles TIR domain profile. 24 191 IPR000157 GO:0007165
Vivi3g05298 1183 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 168 IPR035897 -
Vivi3g05298 1183 Gene3D - 23 188 IPR035897 -
Vivi3g05298 1183 Pfam NB-ARC domain 206 424 IPR002182 GO:0043531
Vivi3g05298 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 452 IPR027417 -
Vivi3g05298 1183 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 777 IPR044974 GO:0006952
Vivi3g05298 1183 Gene3D - 358 442 IPR042197 -
Vivi3g05298 1183 MobiDBLite consensus disorder prediction 1122 1144 - -
Vivi3g05298 1183 FunFam Disease resistance protein (TIR-NBS-LRR class) 22 193 - -
Vivi3g05298 1183 PRINTS Disease resistance protein signature 225 240 - -
Vivi3g05298 1183 PRINTS Disease resistance protein signature 787 803 - -
Vivi3g05298 1183 PRINTS Disease resistance protein signature 300 314 - -
Vivi3g05298 1183 PRINTS Disease resistance protein signature 393 407 - -
Vivi3g05298 1183 SMART till_3 25 165 IPR000157 GO:0007165
Vivi3g05298 1183 Gene3D - 189 354 IPR027417 -
Vivi3g05298 1183 SUPERFAMILY L domain-like 507 873 - -
Vivi3g05298 1183 Gene3D Ribonuclease Inhibitor 537 901 IPR032675 -
Vivi3g05298 1183 Pfam TIR domain 25 196 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g05298 Vivi-Chr3 108033417 108039958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g05298 21 870 WRKY Transcription Factor Family AT4G12020 31.755 3.68e-98 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g05298 - - vvo:131662268 1751.1